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Detailed information on CNT3093184


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30488794Solanum tuberosumOlea europaea9.2240.5590.9188forward
CNT3059312Solanum tuberosumArabidopsis lyrata17.7130.8486.39169forward
CNT30623007Solanum tuberosumDaucus carota17.7136.2786.39169forward

Expression of CNT3093184

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKDFHKNSCRIENEFFIMYILDHELVTAQIEPKRWDG*

Sequence

>CNT3093184
GCCTTTTTTAATTTGACACTGTTCTAGAAGAGGAAGCGTAGCTGGAATGTTGAACCATATTTGTCAACGATGCAAGATAGCCCTAAAGTGAGGGGCTTGG
AGATAGTATTTCTCAAATGTCGATCAACGTGACAATCATGCCTACTTGATAATGCCCTTTCCTTTGCTCCCCTGAGTATCTTCTCTACCCTTAAATGTAA
GCATAAAAGAAGAAATGGAAAGGAGTACTATAATATGTGCTATTATTTGAATCAGTTGTTAATCTTCTCTAGCTTTGATATAAAGGAATGAGGGAGATCA
AAAGGGAGCATGTTAGCCAAATAAAAGGCTCTGATGGAGGTGTAGTCCATGACTTTAGCAATAAGCTAGGTTAGGATGTAGTTATGGTATACGAAATATA
ACTAAGGTATATTTTTTTACTTAGAAATTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAAGATATTATGAGAAAATCAAACTTTCATAAAAAA
AAAAGGAGCAAATGAAAGACTTTCATAAAAATTCTTGTAGAATTGAGAATGAATTTTTCATTATGTACATATTAGATCATGAATTAGTAACTGCCCAAAT
AGAACCTAAAAGATGGGATGGGTGATCTATAAGATCATCTAGCGAGGTTCAACCCTCAGCATGGGATTTTTCTGAAAATCAAAACTAATTTTGTTGAGGA
ACAAAGTAACTCGTCGCTTACCCGTATTTCTCTTGATATATCCATCTGTGTGTCTCCTAATTCCATGAAATCCTTAAAGCATGTGCGATTCATTTAGGAT
CCTTGTCCAAGAAGAAGTTAGTCACTTGTTCTTTATTTTATGTTAAAGGTTTAACTTCTAGGTGTTTAGCAAAAAATAGGAAGACTTTTAAAACTTATAG
TCTAACGTAATCTTTAGATATTTGCGTGGTTGTAAATTATTTGGGTAAAAGGGG