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Detailed information on CNT3093080


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5MYA4|H32_CICIN, E-value = 4e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3051266Solanum tuberosumCucumis sativus30.972882.86210forward

Expression of CNT3093080

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MNCTQISILKETYQVRLSSLLKCSHNTALESQIRLEILCNFSNQSLKR*

Sequence

>CNT3093080
CTCTGCTTGGTCTTCTACTCTGGTGAACATTCCCAATTTCATTTGAGCAGATCCGACACAGATCCAAAGAGGTGAATTTAGCAAGCAGATATGACCATTC
AGATTTGGGAATTGTGAAGGACAATCGGATTGCGGAGTTGATTAAAGACTCCTGTTGTGTGTTTGGACCTTTCTTTCTTGGCACAGTCTCACTTAAATGG
CCGCATCCGACTAGCAGAATACTTTGGATTACATCAACAACATATTTCCCACAGGATATTCACTAAAAGGGTGACAGGACGTTGAATTTGGAATAGAGGG
AGTTGGAAGCTTTACTTAGTGTTCGGTATCCAAATTGGAGCCCAATTAAATTCGGATTCGCGCCGTAAAGTTCCACATTGAGGGGTAAAGCGCTCCCTAA
CAAAGGCGACTCTGTACCCAAAGGGGTGGTTAAGAATGAAAGAGTACTTACCATATTAAGCCCTTTCACCCCTAATACGCCTAGCCAATTGCATATCCTT
AGGTATAATTGTAACTCTTTTAGCATGAATTGCACACAAATCAGTATCCTCAAAGAGACCTACCAAGTACGCCTCAGCAGCCTCCTGAAGTGCAGCCACA
ACACTGCTCTGGAATCTCAAATCCGTCTTGAAATCCTGTGCAATTTCTCTAACCAATCTTTGAAAAGGTAGCTTTCGG