Detailed information on CNT3092943


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30311539Solanum tuberosumCamelina sativa5.4720.0483.64110forward
CNT30681032Solanum tuberosumTriticum urartu2.5422.0896.0851reverse complement

Expression of CNT3092943

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLLQKFYVSPGSFDSRKVKKKRIPVMFHMFVL*

>peptide 2 (36 aa)
MTNHSVTKLLQRQVLPATKLLQRQVLPESNQPTSPY*

>peptide 3 (55 aa)
MASVEGGFVRVGVLGLGSDADSDSSAMDEGKETGNGDQLRDFSTGKVVNGDLKET*

>peptide 4 (43 aa)
MYHLAALTQERLRRRGFQLCSICLFCDPLGFRVDLFTLFYYIR*

>peptide 5 (48 aa)
MGFLFNATVKCQQSVRWWSLLHLWGTGAYNNFKIKYKINSLTLFIFKL*

>peptide 6 (50 aa)
MKVNEKRFLVRWWKSGFWVARDQQYWKASGFFWVEKEAWWVVNELEEVQH*

>peptide 7 (51 aa)
MADSSSPSYESERETILGTMVEIWVLGSEGSTVLESFRVFLGREGSLVGGE*

Sequence

>CNT3092943
GCATTACTTAGGGGAGGATCCTAAATGATTGGGAAATTAAAGTTCTTTAAGACTTTGGAAGAGTTTTAGGGGCTATCAGAAGCAGAGGACAAATTGTAGT
ATAATCCATGCAAAGATGGGACTTTCACAGTCAAGTCTGCCTATTTAGCAATCAGCAACTATGCTTATCAGAATATTGATTGGCCATGGAATTCTATAAT
GCTCCTCCAAAAGTTCTATGTATCACCTGGCAGCTTTGACTCAAGAAAGGTTAAGAAGAAGAGGATTCCAGTTATGTTCCATATGTTTGTTTTGTGACCC
CCTTGGTTTCAGGGTGGACCTTTTCACTCTATTTTATTATATACGCTAAGCGAAAGTCTAACACAGAAACTAATAGCCATTTGTTTCTTCATTGTTCTTT
TACTTATCCATTGTGGCAGCTCTTTCTTAATTTGGTGGGGATCAAATGACTAACCACTCTGTAACAAAACTATTGCAAAGACAAGTTTTACCTGCCACTA
AACTATTGCAAAGACAAGTTTTACCTGAAAGTAATCAACCAACTTCCCCCTACTGATAAACATCATTACAAGCAATTGAAAATGCAATAAACATACATGG
AAAAACACCGGAAAAGATACATGACAATTACTGAAGGATTAATGGCAAACTAGACACGAAAGAGAAACATACCCAACATCAAGAATCCCATTAATAGGAT
CCAAGAACTGCTGATTCGGTTGATGTTGTTGTTGTTGCTGCTGCTGCATTGACAACATCTGCTGCTGTAAACTAACATCAGAATTCCCCACCACATTGCC
TTTCGAATTTGCCCCCTTTGCCTCTACAAACCTCCAAATATACCACGAAGCTACCGACCTATAAGGCTTCCATTTCTCACACAACTGATCCATCTGTGAT
GGCCTAGGAAGATCCTCAAGACCATATAACATTCTCACCCCTTTCCTAATACCAAGATCATGTATCGGCAACACATCCGGCCTATGAAGTGAAAAAATCA
TAAACATATGAACTGACCAAGACCCAATTCCATTCACCATAGTAAGCATTGTAAAAAGGGATTTATCATCCATATCCACAATCGACTTATCCGACAAAAT
CCCATTTTGATACTTCCTTGCTAGGTCATGTAAATAGCTTGCTTTTCTAGCAGAAACCCCAATTTGACGAAGCTGTTGTGGTGTTAATCCCAAAACCATA
TCTGGCATCACATTCGATTCCCCACCACAAAGAGATATAAATCGAGTGTAAATCGATGACCCAGCTTTATACGCTAGCTGCTGAAACAGAATGCTTTTTG
TTAGAGCAAGAAAAGGGGGTTGAAAAAGTTCGAGGGTAGGAAGTGGGTATGTTTCAATTAATGGAGAGAGTAATGGGTCGGAGGATTTGAGGTAATTAAT
GGCGGATTCAAGCTCACCTTCATATGAAAGTGAACGAGAAACGATTCTTGGTACGATGGTGGAAATCTGGGTTTTGGGTAGCGAGGGATCAACAGTATTG
GAAAGCTTCCGGGTTTTTCTGGGTCGAGAAGGAAGCTTGGTGGGTGGTGAATGAGCTTGAAGAGGTACAACATTAATGGCGTCGGTAGAAGGGGGATTTG
TTAGGGTGGGGGTGTTAGGGTTGGGTTCAGATGCAGATTCTGATTCTTCAGCCATGGATGAAGGAAAGGAAACTGGAAATGGAGATCAATTGAGGGATTT
TAGCACAGGGAAAGTCGTTAATGGAGATTTGAAGGAAACCTAAAAATGGGATTTTTGTTCAATGCTACAGTGAAGTGTCAGCAGTCAGTTCGATGGTGGT
CACTGCTACACCTTTGGGGTACAGGCGCGTATAATAATTTCAAGATAAAATATAAAATTAATTCTTTAACACTATTTATATTTAAATTGTGAGATATTTT
CTCAATTTATGAAAAAAAAAAAAGTTACATGTTAGGTAACTTTATAATATTTCTCCTGTTAATATGAAGTATTTAAAGTTTATGTAGTTTAAATTTTGAG
AATCAGAAAAT