« Back to Solanum tuberosum search


Detailed information on CNT3092760


BLAST search results

BLAST vs Swiss-Prot:
sp|P20364|TBB1_DAUCA, E-value = 4e-98

BLAST vs NONCODE:
NONBNAT004015, E-value = 2e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692356Solanum tuberosumOryza sativa19.2229.4281.95133forward
CNT30678154Solanum tuberosumSetaria viridis59.6867.5983.54413forward
CNT30522155Solanum tuberosumSetaria italica20.5216.1583.8142forward
CNT30641079Solanum tuberosumNymphaea colorata35.6933.2481.78247forward
CNT30534291Solanum tuberosumEucalyptus grandis26.7329.0487.03185forward
CNT30516889Solanum tuberosumJuglans regia36.9942.3185.94256forward
CNT30376427Solanum tuberosumArabidopsis thaliana21.3923.9988.51148forward
CNT30617295Solanum tuberosumSesamum indicum20.6634.8883.22143forward
CNT30727252Solanum tuberosumCorchorus capsularis23.2721.591.3161forward
CNT30381383Solanum tuberosumManihot esculenta26.310.3685.71182forward
CNT30629386Solanum tuberosumVigna unguiculata8.0921.7187.556forward
CNT30196370Solanum tuberosumPisum sativum20.9515.2283.45145forward
CNT30486254Solanum tuberosumOlea europaea22.440.4787.74155forward
CNT30710178Solanum tuberosumGlycine max19.6532.0886.03136forward
CNT30291318Solanum tuberosumTriticum aestivum33.0968.7784.72229forward
CNT30223001Solanum tuberosumHordeum vulgare39.7498.9282.18275forward
CNT30390564Solanum tuberosumTriticum turgidum19.2243.7589.47133forward
CNT30562825Solanum tuberosumActinidia chinensis76.4595.8380.53529forward
CNT30586804Solanum tuberosumMusa acuminata39.3135.2381.99272forward
CNT30542792Solanum tuberosumBrassica napus16.0425.5881.98111forward
CNT30511260Solanum tuberosumSolanum lycopersicum29.3450.3785.71203forward
CNT30553024Solanum tuberosumOryza glaberrima42.6320.6680.68295forward
CNT30253208Solanum tuberosumAvena sativa24.1313.8985.03167forward
CNT30261872Solanum tuberosumBrassica rapa25.8720.2386.03179forward
CNT30614070Solanum tuberosumArabis alpina26.7313.3984.86185forward
CNT301973Solanum tuberosumZea mays22.464.8587.1155forward
CNT3041960Solanum tuberosumChlamydomonas reinhardtii14.629.6287.13101forward
CNT30608822Solanum tuberosumGossypium raimondii20.6621.3485.31143forward
CNT30203517Solanum tuberosumHelianthus annuus23.714.5989.02164forward
CNT30627268Solanum tuberosumDaucus carota22.8312.7684.18158forward
CNT30681848Solanum tuberosumTriticum urartu48.9938.3182.3339forward
CNT30720996Solanum tuberosumTriticum spelta14.4540.6586100forward
CNT30341625Solanum tuberosumEragrostis tef47.8333.9578.25331forward
CNT30363168Solanum tuberosumSorghum bicolor27.8919.5783.94193forward
CNT30595966Solanum tuberosumOryza meridionalis23.5526.5983.44163forward
CNT30369350Solanum tuberosumOryza glumipatula42.6342.4582.71295forward
CNT30422340Solanum tuberosumPapaver somniferum23.719.3686.59164forward
CNT30570854Solanum tuberosumVitis vinifera19.868.1686.86137forward
CNT30706519Solanum tuberosumPrunus avium48.740.6582.2337forward
CNT3033661Solanum tuberosumTheobroma cacao19.865.8785.4137forward
CNT3054138Solanum tuberosumAmborella trichopoda28.4738.8680.2197forward
CNT3022005Solanum tuberosumPopulus trichocarpa75.1467.879.81520forward
CNT30322043Solanum tuberosumAsparagus officinalis28.0323.1884.54194forward
CNT30119164Solanum tuberosumCitrus clementina29.3443.5686.7203forward
CNT3036150Solanum tuberosumCucumis melo13.8728.4989.5896forward
CNT30332119Solanum tuberosumDioscorea rotundata26.1628.585.08181forward
CNT30150001Solanum tuberosumBrachypodium distachyon14.8832.5986.41103forward
CNT3099978Solanum tuberosumOryza rufipogon37.7232.2281.61261forward
CNT30575061Solanum tuberosumOryza barthii48.9937.2982.3339forward
CNT30117026Solanum tuberosumOryza nivara33.9634.9780235forward
CNT30333708Solanum tuberosumCynara cardunculus27.1723.2181.91188forward
CNT3049477Solanum tuberosumCucumis sativus18.3544.7287.4127forward

Expression of CNT3092760

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MIISGLIIILFLIICCSILVLLIFCNQIIHVALGFSELHFIHSFTCVPMQESLAPEHGSKLLTHPSKHLLNGG*

>peptide 2 (61 aa)
TFHFSTNQTQSSNEEKTIGNITSSLWQKLNKPTNIKCRQVFRIHIDDHQRPHHHTLPHHLL*

>peptide 3 (31 aa)
MEDEFLFCTLIICSSTSFVLILPLNMAEAVR*

>peptide 4 (40 aa)
MLLSASVNSISSIPSPVYQCKKALRLNMAVNCSLTLLNIS*

Sequence

>CNT3092760
AGACATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCACTTTGGCAGAAATTGAACAAACCAAC
AAATATCAAATGTAGACAAGTCTTTAGGATTCATATTGATGATCATCAGCGGCCTCATCATCATACTCTTCCTCATCATCTGCTGTAGCATCCTGGTATT
GTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCG
CCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGATGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCC
TTTGTGCTCATCTTACCCCTAAACATGGCAGAAGCTGTCAGGTAACGTCCATGACGTGGATCTGCGGCGCACATCATGTTCTTGGCATCCCACATTTGTT
GAGTAAGCTCTGGCACTGTTAGGGATATGTATTGCTGTGATCCACGAGAGGTTAGTGGGGCAAATCCCACCATGAAGAAGTGAAGACGTGGGAAGGGGAT
TAAATTCACAGCCAATTTCCTCAGGTCTGAGTTCAGCTGGCCAGGGAATCTCAAACAGCAAGTAACACCACTCATGGTTGCAGAGATCAAAT