Detailed information on CNT3092581


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT001752, E-value = 5e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378675Solanum tuberosumArabidopsis thaliana67.8341.6495.17331reverse complement
CNT30223244Solanum tuberosumHordeum vulgare84.6338.0692.01413reverse complement
CNT30655404Solanum tuberosumRosa chinensis101.8458.1393.96497forward
CNT30680034Solanum tuberosumTriticum urartu82.9936.2690.12405forward
CNT30725625Solanum tuberosumLupinus angustifolius38.3210.7595.72187reverse complement

Expression of CNT3092581

Peptides detected in this lncRNA

>peptide 1 (46 aa)
GINVFQFLALHRPSNGPWTKRPLPERTMSRGPPPPPQGTSRAYGPL*

>peptide 2 (58 aa)
AESMCSNFWPCTDHPMDHGLNGHCLKGLCPGARRPPHKVHLAPMGRYNYPRRHSKLEG*

Sequence

>CNT3092581
GCGGAATCAATGTGTTCCAATTTCTGGCCTTGCACCGACCATCCAATGGACCATGGACTAAACGGCCACTGCCTGAAAGGACTATGTCCAGGGGCCCGCC
GCCCCCCCCACAAGGTACATCTCGCGCCTATGGGCCGCTATAACTATCCAAGAAGACACTCGAAACTGGAAGGATAAACAAACCCACCCGGTGGACTGCC
GAGCTACAAGTCCTACGACACAGGAGCGGGATTCTCTAAAAAGCCAAGGTCGTGGGTGGCCAAGAGGGCCCACTTGGAGACTTGGGATCTCAGCAGGAAA
TGCGAAGGTTGCAACAAGCCGGCCGGCCAAAGAGAATCAACTAGTTTAGTTCTGATCTGAGTAGGCTCATAATTAGGGAATACCCTAACCCTGGGAACCG
GGGCCTGGCCATCCTTCGTTTGCGGTCGACGTTCCGGCTTTGTCCGTCGACAGCTGAATGTTTCGATCTGGTTCGATTCATGATCGCA