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Detailed information on CNT3092199


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40478|ERF5_TOBAC, E-value = 3e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30490814Solanum tuberosumOlea europaea23.0666.1780.9178forward

Expression of CNT3092199

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPWPHPPQCRRFLTKPESPFYLGHESPLQTFPKASA*

>peptide 2 (41 aa)
MILLLKVSNFKWEIQYCFAASKLKRRPVICLGRIHRSVEGS*

>peptide 3 (42 aa)
MVTMVAPQKYLFHPKSSTNLMVLMELPLLGLFFLLLLFSFPC*

>peptide 4 (53 aa)
MLLLTLNFHFLYHNRFRGYRNVQRWLAFFEVTLFRAHNMWFCLKFEETIILCF*

Sequence

>CNT3092199
TAGATTGATTGCGCATTTACATTAAATGACGATTGAAGATCCAAACACTCATAAAACTAATCCTAATTCACCTCAGACTTAGTTTATAGTCAGGTGCATA
TTCATCAAATACTTATAATCCCAAATTATATCATTACAAGCTGAGACAATGGTGACAATGGTGGCACCTCAAAAATACCTTTTCCATCCCAAATCGTCGA
CCAATTTGATGGTGTTAATGGAGCTGCCGCTGTTGGGACTATTCTTTCTTCTTCTTCTATTTTCCTTTCCTTGTTGATAACTAATTGCTCTGTTTCTCTC
ACCCTTTTATTCCCTGATGTTTTAATCTCATCATCATGATTTTGTTGCTTAAAGTTAGCAACTTCAAGTGGGAAATTCAATATTGCTTTGCTGCCTCTAA
GCTTAAACGCCGCCCTGTCATATGCCTTGGCCGCATCCACCGCAGTGTCGAAGGTTCCTAACCAAACCCGAGTCCCCTTTCTATTTGGGTCACGAATCTC
CGCTGCAAACTTTCCCCAAGGCCTCTGCCTAACTCCCCTGTAATGCTTCTTCTCACTCTCAACTTCCACTTTCTGTACCACAACAGGTTTCGCGGGTATC
GCAACGTTCAGAGATGGCTTGCGTTCTTTGAAGTTACTCTGTTTCGAGCTCATAACATGTGGTTTTGCCTTAAATTCGAAGAAACCATCATACTCTGTTT
TTGAACTAGCACTAAAGAAGCTTGATATATCATCAAGATTTGAACTTTGAGTTGTTTCAAAAGAGAAACAAC