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Detailed information on CNT3091732


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 8e-43

BLAST vs NONCODE:
NONSLYT000794, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316024Solanum tuberosumCorylus avellana44.3462.7380.59505forward
CNT30377104Solanum tuberosumArabidopsis thaliana43.3769.9779.76494forward
CNT30616460Solanum tuberosumSesamum indicum68.1354.0879.64776forward
CNT30269270Solanum tuberosumChenopodium quinoa35.2176.3881.05401forward
CNT30378908Solanum tuberosumManihot esculenta49.1759.3280.18560forward
CNT30559586Solanum tuberosumActinidia chinensis54.777.280.42623forward
CNT30234460Solanum tuberosumBrassica oleracea48.979.2379.71557forward
CNT30263459Solanum tuberosumBrassica rapa36.5276.8981.01416forward
CNT30705866Solanum tuberosumPrunus avium28.3643.382.66323forward
CNT30120999Solanum tuberosumCitrus clementina55.7547.3279.06635forward

Expression of CNT3091732

Peptides detected in this lncRNA

>peptide 1 (31 aa)
ANTRPHLITSLVIYLERVWNPPIQKPNNFRN*

>peptide 2 (65 aa)
MLDYNWVMWVSMKDWLENMLDLSGCSQGSWGYKWGKWGCNQEMSGCNQGMMGCNQGMMDCNQGMK*

>peptide 3 (53 aa)
MQEKLDYMMEKSDYKRVRWGYMKVKWGCKMAKWGCMPEKWGCRPEKWGCMPEK*

>peptide 4 (48 aa)
CKHKTTFNHIISNISRAGLESTNTKTQQLQKLTSYYEAETRYKLGKVT*

Sequence

>CNT3091732
CTGCAAACACAAGACCACATTTAATCACATCATTAGTAATATATCTAGAGCGGGTCTGGAATCCACCAATACAAAAACCCAACAACTTCAGAAACTAACT
AGTTATTATGAAGCTGAAACCAGATATAAGTTAGGTAAAGTGACCTAATTAAGAAGATTAAGGCGCTACTAAAGTCACTGTATTATTATCAAACAGAACC
AAATTAAGAACCTTTTCTGTCTCAGCAGAAGAATCAAAGACACATGTATCAAACCAAGGTTGTTTACCTGTAACTTGGAGATGACGGGCTGTATGGACTA
GAAGGAGACAGCTTCGGGCTGGTTGGCGAATATGCAAGGGAGGGGCTGTATCTCGCCGAGGGATTGTAACTTGGTGATGTAGGACTGTAGGATGGTGATG
TTGGGCTATAGCTGGGAGATGTTGGGCTGTAACCAGGGGAGGTAGGACTGTATGCAGGAGAAGTTGGACTATATGATGGAGAAGTCGGACTATAAGAGGG
TGAGGTGGGGCTATATGAAGGTGAAGTGGGGCTGTAAGATGGCGAAGTGGGGCTGTATGCCGGAGAAGTGGGGCTGTAGGCCGGAGAAGTGGGGCTGTAT
GCCGGAGAAGTAGGGCTGTAGCTAGGTGATGTTGGGCTATAGCTAGGCGAGGTTGGGCTATAGCTTGGAGATGTTGGACTATAACTGGGTGATGTGGGTG
AGTATGAAGGACTGGTTGGAGAATATGCTGGACTTGTCGGGCTGTAGCCAGGGGAGCTGGGGCTATAAGTGGGGGAAGTGGGGCTGTAACCAGGAGATGT
CGGGCTGTAACCAGGGGATGATGGGCTGTAACCAGGGGATGATGGACTGTAACCAGGGGATGAAGTAGGAGAGAAAGCCATGCCACCCACATAAGGAGAA
AATTGAGCATCTGTAATCGGTGACATCCGCATATTTGGGCTGAGCAAATAATTTGGAGACATCATTCCATCATGATACGGGGTTCCACTGATAGGTGAAC
GCCCAGGTGTCATGCCAAATTCAAGACCACCTTCCATGTAGCTAGGTAATGGTATCTCAATAGCTTGTTTCAACATCTCCTCATTGAGGTACAAAGAACA
GCTTCCTGTGCCAATTGGTGCAAGCTGACCTAACATGAT