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Detailed information on CNT3091075


BLAST search results

BLAST vs Swiss-Prot:
sp|P62981|RS27A_SOLTU, E-value = 2e-59

BLAST vs NONCODE:
NONPOPT001132, E-value = 3e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374078Solanum tuberosumArabidopsis thaliana40.1124.892.11152forward
CNT30500037Solanum tuberosumCoffea canephora33.7721.8492.19128forward
CNT30276117Solanum tuberosumChenopodium quinoa86.8144.786.32329forward
CNT30502101Solanum tuberosumNicotiana attenuata40.1132.3490.79152forward
CNT30410354Solanum tuberosumPapaver somniferum43.2715.587.2164forward
CNT3025796Solanum tuberosumPopulus trichocarpa41.1635.2189.1156forward
CNT30175006Solanum tuberosumVigna angularis37.7327.7190.21143forward

Expression of CNT3091075

Peptides detected in this lncRNA

>peptide 1 (96 aa)
VEMVSHKSSSTALSIRALLTKPLNLSSIIHLIELQHSELNLLLLVLDLLWLGVVGKSTTILKLLSGENQTLLVWGNPFLVLDLGFDIVDGVGRLNL*

>peptide 2 (37 aa)
MVSEDSTSRVIVFPVRVFTKICIFAWRREISGAAAFRV

Sequence

>CNT3091075
GTCGAAATGGTTAGCCATAAAAGTTCCAGCACCGCACTCAGCATTAGGGCACTCCTTACGAAGCCTCTGAACCTTTCCAGTATCATCCACCTTATAGAAC
TGCAACACAGCGAGCTTAACCTTCTTCTTCTTGTGCTTGATCTTCTTTGGCTTGGTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGA
AAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGT
CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTCGCCTGGAGGAGAGAAATCAGTGGCGCTGCGGCTTTTAGGGTT