« Back to Solanum tuberosum search


Detailed information on CNT3091054


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000377, E-value = 2e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533125Solanum tuberosumEucalyptus grandis13.6324.0482.4125forward
CNT30572839Solanum tuberosumVitis vinifera18.8769.280.92173forward

Expression of CNT3091054

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKQLASNSFVSFFIFLTIVDLVLASCQVVT*

>peptide 2 (54 aa)
GDRNSISLHFFHHLKFDYNGKKDAVFVLSFQTLMIFAAFTTGFSLAIASRPAVL*

>peptide 3 (67 aa)
MTIGVSMFTAEQFAAPASESGQSYLPSTTGATIHLSLSRRSDFLSGNDLNELNLADFSDLTNFSANL*

Sequence

>CNT3091054
CGGAGATCGGAATTCGATCTCTCTCCATTTTTTTCATCATTTGAAATTTGATTATAACGGTAAAAAGGACGCGGTTTTCGTGTTATCCTTTCAAACTTTA
ATGATTTTTGCTGCTTTCACGACCGGATTCTCCCTCGCGATCGCTTCTCGGCCGGCGGTTTTGTAGTCGTAGTTACAATCATGACGATCGGAGTATCGAT
GTTCACCGCAGAACAATTCGCCGCACCGGCATCGGAATCCGGTCAATCCTACCTTCCTTCGACAACCGGAGCAACGATTCACCTCTCTCTTAGCCGGCGA
TCAGACTTCCTGTCCGGCAACGACCTCAACGAGCTGAATCTCGCCGATTTTTCAGATCTGACCAATTTCTCAGCGAACTTGTGAGGAATCGTCACCGCCG
ACCCCGTCGGCGAGCTGGATGAAGTTGAGGTAGCCGCGGTGGTGGCGTTGAAGCACTTTTGACACATATTGTTTGTGGCTGGATTTCCTGTGACTCCACA
ATTGATGCAAAGCGTTATAGTTTCAGAAGTTCTAGATTGGAAGAAGGTTATCTCATATTGGAAGATTTTAGAGACATGTGGAGAATCTTAGAATTTCATG
AATTTGTATGGAAGATCTTTGGAATCTTCTAGCTATGTAGAAATTTAAAATGGGAACTTATTTGTAAATATGTAGGGATTTAATTGACAATTATTATTTA
CATATTAGTCTCTAAATTAGTAGTATAATTAGAAGGATCTATTCGTAAATGAAACAACTAGCAAGCAATTCCTTTGTGTCTTTCTTCATTTTCTTAACGA
TCGTCGATCTAGTATTAGCGAGTTGTCAAGTTGTAACTTAATAAAAAACTAAATTTGTGACACTACAGATCATATACGGACTAGTAATGAAGATGAGGTC
AAAGAATCAACCTCTAA