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Detailed information on CNT3091042


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 4e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500451Solanum tuberosumCoffea canephora40.5513.8783.78148forward
CNT30615836Solanum tuberosumSesamum indicum58.6355.8784.58214forward
CNT3068683Solanum tuberosumQuercus suber65.7548.7880.42240forward
CNT30524728Solanum tuberosumPhaseolus vulgaris54.2536.6781.31198forward
CNT30503775Solanum tuberosumNicotiana attenuata98.981.4993.07361forward
CNT30182233Solanum tuberosumSecale cereale33.4219.6183.61122forward
CNT30223417Solanum tuberosumHordeum vulgare14.2522.9188.4652forward
CNT30539234Solanum tuberosumBrassica napus62.4724.9280.26228forward
CNT30508626Solanum tuberosumSolanum lycopersicum92.610097.34338forward
CNT30261302Solanum tuberosumBrassica rapa61.3743.3381.25224forward
CNT3066796Solanum tuberosumLeersia perrieri34.5232.3982.54126forward
CNT30477892Solanum tuberosumArabidopsis halleri82.1928.0481.67300forward
CNT30570592Solanum tuberosumVitis vinifera25.2128.4883.792forward
CNT30645151Solanum tuberosumCannabis sativa67.425.8182.52246forward
CNT30325711Solanum tuberosumAsparagus officinalis39.1844.8388.11143forward
CNT30580197Solanum tuberosumEchinochloa crusgalli21.379.4785.978forward
CNT30594668Solanum tuberosumEragrostis curvula4043.3282.88146forward
CNT30603529Solanum tuberosumOryza punctata48.4923.1479.66177forward
CNT30174824Solanum tuberosumVigna angularis44.9317.2680.49164forward
CNT30332943Solanum tuberosumCynara cardunculus54.253881.82198forward

Expression of CNT3091042

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MNRRSRARQMINVINFKQDRLHHIMSNQLELRVIEMVQQVLFLTSKKIINDNHTIPSLYQPI

>peptide 2 (48 aa)
TNGINIAPISFNLRMLQRITIHFTCASYQKSSSYSFCQPQHVQCSHHI*

Sequence

>CNT3091042
ACCAATGGGATTAACATTGCCCCAATAAGTTTCAACTTGAGGATGCTGCAAAGGATCACCATACACTTCACTTGTGCTAGTTATCAGAAATCTAGCTCCT
ACTCTTTTTGCCAGCCCCAACATGTTCAATGTTCCCATCACATTTGATATAATGGTCTTGACGGGATTATACTTGTAATGAACAGGAGAAGCAGGGCACG
CCAAATGATAAATGTGATCAACTTCAAGCAAGATAGGCTCCACCACATCATGTCTAACCAACTCGAACTTAGGGTTATTGAGATGGTGCAACAGGTTCTC
TTTCTGACCAGTAAAAAAATTATCAACGACAATCACACTATCCCCTCTCTCTATCAACCTATCCA