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Detailed information on CNT3090855


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2MIC9|TI214_SOLBU, E-value = 0.0

BLAST vs NONCODE:
NONCQUT000004, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30495497Solanum tuberosumOlea europaea18.694.9193.17205forward
CNT30502432Solanum tuberosumNicotiana attenuata70.9688.5698.85782forward
CNT30625292Solanum tuberosumDaucus carota30.446.6695.22335forward
CNT30620564Solanum tuberosumCajanus cajan43.019.1683.76474forward
CNT30726607Solanum tuberosumLupinus angustifolius34.9432.6887.01385forward

Expression of CNT3090855

Peptides detected in this lncRNA

>peptide 1 (29 aa)
SIPSIIIEKKTHKRFLKPEEVLIFIFFIK*

>peptide 2 (32 aa)
MNIMSCPVIKPVVADTFFSVPSSITRARRRKR*

>peptide 3 (33 aa)
VDSIDYNRKEDSQEVFETRRGLDFHFFYQVVAI*

Sequence

>CNT3090855
GTCGATTCCATCGATTATAATCGAAAAGAAGACTCACAAGAGGTTTTTGAAACCAGAAGAGGTCTTGATTTTCATTTTTTTTATCAAGTAGTTGCAATTT
AAAATTTTCTAGATTCCCCGTGTTATTATTATTCAGATAAGAATCCTGATAATCATAAATTGGACTATTACTAGTATTAATATTGTTATAGCCTGTCTCT
GTAAGGTGAGAGTGGAATTTATCCTTTATTTTGTCCTTTCCATTCACTCGGATTTCTTCCGTTTCATCGATTTTGTCCGGATCCCACCCTTCTTCCGAAA
AAAGGGAAGGAGAAGGATAAGGATCTTCTTCAGTGGATCCCTCTTGTTCCTGTTTAGTCCCCTTCATTTCGGAAGCAGTTTCTATTTCTACATCTCTTTC
TTCCTCACTTTCCACCCTTTCTTCTGTTTTTGAGGCTTCTTTCAGTTTCTTAGTAAGAATGGGTGAGGGTATTCTGCCTAAATAGTAGACACAGGTAATA
AATAAGAGAATACTAAAGATCCGAGCCATAGAATTTCTCAATTCTAATACAAGGTACTTATTAGATCGAATGTACTTATTCGATCTAATAGAATGATTTT
GCCGTATCCAGACTAATACCAATCCAAGCCATTTCATGAATAAAATGTGACCAATTAACCAACCAACAAAACCACTTGTTACAAATAAGATCTTGTTGTT
GCATCGAAAGAGATAAATGTTGACTAATCTGGCTAACATTGAACTTGGTAAAATGAAATGGTTGAATAATTGAAAAATGAGATTATTCAGGAATACACAT
TGAATGCTGAGATTACGCATTGAATTTCTGGTAGTAGATCCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAAATGAAACAAAAGATATGGTAGAG
CTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATATGAACATCATGAGCTGTCCCGTAATAAAACCAGTTGT
TGCTGATACCTTCTTCTCGGTTCCTTCTTCCATAACCAGAGCTCGGAGAAGGAAGAGATAAGAGGGCCCTATGGAGAATGTGGTCAGAAATCCATAATAG
AG