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Detailed information on CNT3090854


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09G27|PETG_PLAOC, E-value = 2e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200737Solanum tuberosumPisum sativum34.2233.2794.05168forward
CNT30235780Solanum tuberosumBrassica oleracea2211.694.44108reverse complement

Expression of CNT3090854

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVGASNFHLLGVGAEKSSLYRLGFLGFDAYLLIIKRGGFNKGAESHLTVRRGGQ*

Sequence

>CNT3090854
AAGTCAACAATAAAGAAAAAAGAAATAAATAGAATATAGAAAATCATTGAATTTGTTTGCTCCGATACAAGAGATCGGCCCCGAAGCAAGATATGGTGGG
TGCCAGCAATTTTCACTTGTTAGGAGTAGGGGCTGAAAAGAGCTCTTTGTATAGGTTGGGTTTTCTGGGCTTTGATGCTTACCTTCTTATTATTAAAAGG
GGAGGGTTTAATAAAGGAGCTGAAAGCCACTTGACTGTAAGGAGAGGAGGTCAATAAAAAAAAAAGAGATGTTAATTAATCAAAGGTCCAACTGATCACC
ACGCCTGTATTGTAAATATGCAGTTAGGAATAATCCAGCCAAAGTAATAGGAATTAGGCCTAACACGATTCCAAATAGAAAAACTTCAACCATTTTTCTT
TGTTTGAAAGGAGAAAAAAATGAAGGGAATATCTATACCTAAATATTAATCTGAATTGACATGAATCTCAATGACAATGACCAAGAATTGA