Detailed information on CNT309074


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670613Zea maysSetaria viridis84.7262.8995.08244forward
CNT30639803Zea maysNymphaea colorata34.3818.483.8499forward
CNT30515079Zea maysJuglans regia26.3914.8485.5376forward
CNT30372291Zea maysArabidopsis thaliana42.3636.8686.07122forward
CNT30636687Zea maysCapsicum annuum47.9217.481.88138reverse complement
CNT30188720Zea maysSecale cereale31.9420.2691.392forward
CNT30302990Zea maysTriticum aestivum56.9457.7590.85164forward
CNT30217218Zea maysKalanchoe fedtschenkoi32.9918.2784.2195forward
CNT30649581Zea maysRosa chinensis27.7812.5883.7580forward
CNT30595676Zea maysOryza meridionalis53.8238.7590.32155forward

Expression of CNT309074

Peptides detected in this lncRNA

>peptide 1 (33 aa)
PYEQTCRRPLGCNPDPDRWPPNIHKLSALTNRS*

>peptide 2 (32 aa)
MATQHPQAFRSHQPKLTSQSRALPSTCWPGRR*

>peptide 3 (52 aa)
DHMNRPAVAHWVAILTQTDGHPTSTSFPLSPTEVDQPVKSIAEYMLAREKMR*

Sequence

>CNT309074
GACCATATGAACAGACCTGCCGTCGCCCACTGGGTTGCAATCCTGACCCAGACAGATGGCCACCCAACATCCACAAGCTTTCCGCTCTCACCAACCGAAG
TTGACCAGCCAGTCAAGAGCATTGCCGAGTACATGCTGGCCAGGGAGAAGATGAGGTGAAAGAAAGAGTAGGAGTATGTCACCGGCCTCGGCACATCCTT
CTTATCTTCTTGTTCGTCTGCCTTGCTGAAGGGAAGCAATGGCTACCAGTTGACACAGCTTTTGAGTGATTGTGAAGCCCATTGCATT