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Detailed information on CNT3090659


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 3e-62

BLAST vs NONCODE:
NONVVIT001259, E-value = 1e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30314996Solanum tuberosumCorylus avellana91.5943.3577.34512forward
CNT30699090Solanum tuberosumQuercus lobata40.7958.0279.82228forward
CNT30713283Solanum tuberosumMalus domestica golden20.939.4783.76117forward
CNT30573413Solanum tuberosumVitis vinifera55.6418.2180.06311forward
CNT30707309Solanum tuberosumPrunus avium24.1517.4480.74135forward
CNT3026124Solanum tuberosumPopulus trichocarpa22.3617.9983.2125forward

Expression of CNT3090659

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMDFPHCCNFINKFFPISFRIIENFYSNVN

>peptide 2 (47 aa)
YPPLHQNSSSLQPFQEAAFQSYKHQICETLFRNCLISLLVQYNPWFL*

>peptide 3 (41 aa)
MVPLASVIVTTLFSLEHNLARPKSEILGFRSNRIFFGLISK*

>peptide 4 (34 aa)
IHLCIKILPPSNHFKKQHSKAINIRFVRRFSEIA*

Sequence

>CNT3090659
TATCCACCTTTGCATCAAAATTCTTCCTCCCTCCAACCATTTCAAGAAGCAGCATTCCAAAGCTATAAACATCAGATTTGTGAGACGCTTTTCCGAAATT
GCTTGATATCACTTCTGGTGCAATATAACCCATGGTTCCTCTAGCTTCAGTCATTGTGACAACACTTTTCTCTTTAGAGCATAACTTAGCAAGACCAAAA
TCAGAGATCTTGGGGTTCAGGTCTAACAGAATATTTTTTGGCTTGATATCGAAATGAAGGATTTGTTGGTCACATCATTGATGAAGATACTCTAGCCCTT
TTGCTATTCCCATAGCAATATCATGAAGCTTCTTCCAATAAGGGTGATATTATCTTTGAAACTTGTCGGAAAAATGAGCTTGTCAAGTGACTGATTTGGC
AAGTATTCAAACACTAGAGCTCTTCTAACTCCATCAGCACAGAAGCCAACTAGGCGAACCACGTTGACATGATGGATTTTCCCCATTGCTGCAACTTCAT
TAATAAATTCTTCCCCATTTCCTTCAGAATCATTGAGAATTTTTACAGCAACGTGAATT