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Detailed information on CNT3090620


BLAST search results

BLAST vs Swiss-Prot:
sp|A8W3I3|PSBC_CUSOB, E-value = 5e-09

BLAST vs NONCODE:
NONSLYT003774, E-value = 2e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730376Solanum tuberosumCorchorus capsularis5.621.388.2485forward
CNT30363645Solanum tuberosumSorghum bicolor5.627.687.0685forward
CNT30557406Solanum tuberosumPanicum hallii5.620.1487.0685forward

Expression of CNT3090620

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGGSLISSDIFVMVGSFYIATFFGENPSL*

>peptide 2 (44 aa)
MSPENTQIDPTSRLPSTHLPSPIRNSFSFKHTEENLRSVHNIFR*

>peptide 3 (33 aa)
MGKSFFERFYNFRTIPSFFLGLMNNKSFYRCEN*

Sequence

>CNT3090620
CTCTAACACTCATTTGCAATTCCTCATTTGCCTATAATTATTGAAAATGATGAACAAAGGGAAAATAGGGGAGGAAGAAGCAATAACTTCAGCCTTTGTT
TTCCCATTTTTCTGACCAGCCTCTGCTCTCCAAGCTGCTGTCCAGCCACCAAACAACCACCAAACGACCCCATTTTTTCCGTTTCCATAGCCACCATCAC
CCACTTTCCGGCCAGCGACCAAACCCACATGAAATCAGCCCACTCCGGCAGAAAACCCGTAAACCACCTCACAACCAGACGCTAACTCCGGTGAACCAGA
CCACCCTTTACTACCTCTTTTCTCCAGCCAAAATGTCACCAGAAAACACCCAAATCGACCCCACTAGTCGACTTCCCTCAACCCATCTTCCTTCTCCAAT
CAGAAACTCATTCAGCTTCAAACACACAGAAGAAAACCTGAGATCTGTCCATAATATTTTTCGATGAGCAATTGTTTTGATTTCATTCAAAAGTCGTAAT
TTGTTTCATATATAAGCATTATTGGATTGAAGAGAAAATTGAAAAGGGGGGAAATGGGTGGATCTTTGATAAGTTCAGACATTTTTGTAATGGTGGGTTC
TTTTTACATTGCAACATTTTTTGGCGAAAATCCATCTCTCTAGAGACAATTAAATGAAAGGTGTCAATTAAGTCTTGCTTTGATTTTTGGTGACACTTTG
ACCAAGAAGCCAGAAAAATGATTAGATATAAATTAGATAAAATAAATGAGTTGAAAAAAAAGGAATACTTAAGCTGATTCCAAGATGTATGATTGAATCA
AAGTAATTTGTACTTCATTCAAGCATTGGATCTCCTGTCTCATATCAATTAAGAGGGGTCATGGAAAGAACAGGTTCAAAGTCACGATCAATTCCTTTTT
CAAATCCTGATGCAGCTGCACGAGCCCTTCCTGATGTGAATTAGGAAGGATTGGTCGACGAAATATGAACCGAAAACTGAAAGGGTCAAATCCATTTTAA
AATGTAATTAAGTAAATCTAGGACCAAATTAACATTTTCAAAACTTTCTAATCTTTTATAAAATACAAAAAAAAACACTTCAGTTTTCAACTTTTATAAT
TCTATCCAAACCATTTAAAAAAAAGTAAAAGAAAATAGAATTTTCTCTTCTTCTCCCAACGTTCTCTTTTCTCTTCTTCTTCTTCCTTAGAAAATCCAAA
AATACGACTATCAAAACAAATATTCTCCCCCATTATCTTATCTTCCTCCTCATCTCCGACCGTGACTATCTCCTCTTTCTAAACTGAAGATTGTGTTCGA
CTTAAAATGGGCAAGTCATTTTTTGAAAGATTTTACAATTTTCGAACAATACCAAGTTTTTTTCTTGGGTTAATGAACAATAAATCGTTCTATAGATGTG
AAAATTGAATAATGGTGTAATGGTACGTATTATTTATTGTTTTTGAAAGAAAATCAACAAATCCAAAAAAGCCCTAATTTTGAGGAAATGTATATGTATT
GTTAACATTCAGTGAAAA