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Detailed information on CNT3090473


BLAST search results

BLAST vs Swiss-Prot:
sp|P33081|AX15A_SOYBN, E-value = 1e-31

BLAST vs NONCODE:
NONSTUT000591, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3044418Solanum tuberosumPrunus dulcis33.429.4981.37161forward
CNT30171686Solanum tuberosumTrifolium pratense21.3713.786.41103forward

Expression of CNT3090473

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIWGSQISFSASPQHTQQNGPWEYLWLRKTS*

>peptide 2 (59 aa)
EVKSFITSISFEVDVSLVYLVFLLTLNCTQWSSWLTTTIQNCVTKNMGTSFLLTSSIEM*

>peptide 3 (39 aa)
MGITNLFFCISPTYTAKWPLGISLVAEDFLIIRRIAMMI*

Sequence

>CNT3090473
GGAAGTAAAAAGTTTCATTACTTCAATTTCTTTTGAAGTAGATGTGTCCTTAGTCTACCTAGTGTTTCTTCTAACTCTCAACTGTACACAGTGGAGTTCC
TGGCTTACTACAACTATACAAAATTGTGTAACAAAAAATATGGGGACAAGTTTCCTTCTCACTTCCTCAATCGAGATGTGAGATCGGTGAACAAATCCTC
ACTGCAGGGAATAGTCACACCACCCATTGGATGGTCGAAGCCAAATTCTTCCTCAGCTTGACTAAGCAAGTCTTGAAACAAAGGTTCGCTCAAGAATGAT
ATGGGGATCACAAATCTCTTTTTCTGCATCTCCCCAACATACACAGCAAAATGGCCCTTGGGAATATCTCTGGTTGCGGAAGACTTCTTGATCATACGAA
GAATAGCCATGATGATTTAGTTTTGGTATAGATAAGAAAGGTAAAAGAATTACAAAGGAACTCAAAAGCAGAAAAAGTTTTG