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Detailed information on CNT3090378


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 3e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546900Solanum tuberosumIpomoea triloba42.5331.7679.76168forward
CNT30375732Solanum tuberosumArabidopsis thaliana37.7216.6782.55149forward
CNT30559952Solanum tuberosumActinidia chinensis31.917.682.54126forward
CNT30650912Solanum tuberosumRosa chinensis43.0423.4282.35170forward
CNT30626852Solanum tuberosumDaucus carota39.2417.980.65155forward
CNT30686876Solanum tuberosumTriticum urartu25.3223.7582100forward
CNT30704079Solanum tuberosumPrunus avium41.7759.5783.03165forward
CNT3024510Solanum tuberosumPopulus trichocarpa42.2829.8780.84167forward
CNT3036985Solanum tuberosumCucumis melo27.0918.6782.24107forward

Expression of CNT3090378

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MYQAKHGHPSEDRESQQPIFPMVSALFLCTC

>peptide 2 (43 aa)
CWLQFQERFQVGNLFLEFIIITSNGHFHWVVGSLALNIISEVH*

Sequence

>CNT3090378
TCTGCTGGCTCCAATTCCAGGAACGATTCCAAGTTGGAAATCTGTTCCTTGAGTTCATAATCATCACTAGCAACGGGCATTTCCATTGGGTAGTAGGGAG
TTTGGCTCTGAACATCATATCCGAAGTTCATTAAAGGAGAGTTGTTATCGGATATTATGTTAGAACTCTCAAGGAGTAATGCTGGTGGAGGATCAGCAGC
GACAGTGGTGATGGGACGGGGAAGTTGAGTTTGGCCTTGTCACCACGAATGCGCTTAGCAGCCTCATCATAGGCTCTGGCAGCATCCTCTGCTGTGTTGA
ATGTACCAAGCCAAACACGGACACCCTTCTGAGGATCGCGAATCTCAGCAGCCCATTTTCCCCATGGTCTCTGCCTTATTCCTCTGTACTTGTTC