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Detailed information on CNT3090302


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30491922Solanum tuberosumOlea europaea26.8658.6291.18170forward
CNT30504398Solanum tuberosumNicotiana attenuata24.810.3492.99157reverse complement
CNT30304569Solanum tuberosumTriticum aestivum8.3723.7790.5753reverse complement
CNT30597766Solanum tuberosumFraxinus excelsior18.0123.5590.35114reverse complement
CNT30654158Solanum tuberosumRosa chinensis11.5323.0387.6773reverse complement
CNT30203008Solanum tuberosumHelianthus annuus44.2325.4386.07280forward
CNT30414626Solanum tuberosumPapaver somniferum23.2233.4192.52147forward
CNT30110673Solanum tuberosumOryza longistaminata15.3235.7992.7897forward
CNT3039143Solanum tuberosumCucumis melo21.3312.1494.81135forward

Expression of CNT3090302

Peptides detected in this lncRNA

>peptide 1 (37 aa)
SCMHYMNRKQPTGIIQYNGMNTIPRQTHGNTPYIKDK*

>peptide 2 (35 aa)
LYALYEQKATDRDHSIQRYEHDTKANPWKYPLYQR*

>peptide 3 (30 aa)
MDKINTIKTNMNIIKTIKKKIVTFPPQSEI*

Sequence

>CNT3090302
AGCTGTATGCATTATATGAACAGAAAGCAACCGACCGGGATCATTCAATACAACGGTATGAACACGATACCAAGGCAAACCCATGGAAATACCCCTTATA
TCAAAGATAAATGAACACTACGTAACTTTATTGCATTGGAAAAGACTATAATATGACTATCCTATGGACCACTCTTGTTGAGTCAATTATTTCCGAACAA
GGGTTTCTATTCTGTTGGTAATAATGGAACAATTCTGTTCGTAGGAACAAAGAGAAGCAGATTTATTCTATACTCGATAAGTACCAATACGCAATGGGGG
AGTTGATCCCATTTTCTATGAGCGAATGAGTCCATACTTATTTATCATTAGAAAGACCTATTCGTAATAATTTGAGTTTATTCATTCTGTCTTTCTTTAT
GAATTTTGAGAATCTATGGATAAAATAAATACGATAAAAACCAATATGAATATTATAAAGACAATAAAAAAAAAAATTGTTACGTTTCCACCTCAAAGTG
AAATATAGTATTTAATTCGTTCTTTCATTTAATGCCTATTGGTGTTCCAAAAGTTCTATTCCGAAATCCTGGAGATCCAATTTCATCTTGGGTTGACGTA
TAGTGCGACTTGTCAGATATATTGGGTCATATG