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Detailed information on CNT3090242


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EW21|PETD_NYMAL, E-value = 6e-105

BLAST vs NONCODE:
NONSTUT000261, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30407229Solanum tuberosumBeta vulgaris29.94102.3485.71350forward
CNT30632102Solanum tuberosumVigna unguiculata42.1774.4789.25493forward
CNT30201894Solanum tuberosumPisum sativum39.8626.1787.55466forward
CNT30504292Solanum tuberosumNicotiana attenuata51.533.7496.51602forward
CNT30193370Solanum tuberosumSecale cereale41.1529.7885.24481forward
CNT3085551Solanum tuberosumVigna radiata12.3263.1688.89144forward
CNT30553968Solanum tuberosumOryza glaberrima30.218.7286.12353forward
CNT30435040Solanum tuberosumAegilops tauschii41.7554.2885.66488forward
CNT30662532Solanum tuberosumTriticum dicoccoides34.2258.0684.75400forward
CNT30309624Solanum tuberosumCamelina sativa33.0291.4788.6386forward
CNT30131654Solanum tuberosumLolium perenne13.654.0887.42159forward
CNT30230699Solanum tuberosumAnanas comosus27.6355.3190.09323forward
CNT30655369Solanum tuberosumRosa chinensis30.7112.4390.53359forward
CNT30622073Solanum tuberosumCajanus cajan34.39100.2590.3402forward
CNT30419844Solanum tuberosumPapaver somniferum42.6983.5887.98499forward
CNT3025179Solanum tuberosumPopulus trichocarpa27.5440.2591.61322forward
CNT3035458Solanum tuberosumCucumis melo30.3719.2589.3355forward
CNT30557534Solanum tuberosumPanicum hallii13.626.1986.16159forward

Expression of CNT3090242

Peptides detected in this lncRNA

>peptide 1 (61 aa)
KNLKRPKVRDLSIGNVAPMPNQRATAVPIKKTVVATGRRNGFWNLLTFSKKGTVNNNPSGT*

>peptide 2 (49 aa)
MDPPVHQSLMVLKWLSLHYMQLYLELLLEKYIKDHWAMRARQNNYDPYS*

>peptide 3 (31 aa)
MLHQCPTKGRLRYQSKRQSSLLAGEMDFGIY*

>peptide 4 (30 aa)
MVNTARTTPVTKVNSRGFLNPSVRYTRNTCR

>peptide 5 (30 aa)
MAKPTLHAIVPRITTGKIYKRSLGHAGSPK*

Sequence

>CNT3090242
AAAAAATTTAAAAAGACCTAAAGTTAGGGATTTATCAATAGGTAATGTTGCACCAATGCCCAACCAAAGGGCGACTGCGGTACCAATCAAAAAGACAGTC
GTCGCTACTGGCCGGCGAAATGGATTTTGGAATTTATTAACATTTTCTAAAAAAGGTACTGTTAATAATAATCCCTCAGGTACTTAAACCATTAAAAGAA
CCCCCAATAATTTATTGGGCACTGTACGAAGTATTTGAAATACAGGATTGAAATACCATTAAGGTAAGATTTCCAAAGGGGTTGCAAATGGATCCGCCGG
TTCACCAATCATTGATGGTTCTAAAATGGCTAAGCCTACATTACATGCAATTGTACCTAGAATTACTACTGGAAAAATATATAAAAGATCATTGGGCCAT
GCGGGCTCGCCAAAATAATTATGACCCATACTCTTAGCCAATTTAGCTCTTAATACAGGATCATTCAAGTCAGGTTTTTTTGTTACTCCCATAATCCATT
TTCTCTTCACAAAATTCCCTTCAATCCCCCCGTTTAGTTGACATGAATGGTTAAAGGGAAATGTCCAAATCCATGTCTTATTATTTTCAATAATCCATAC
TTGTAGCAATGAATATATAATCCATTTTCCTTTCACAAAATTCCCTTCAATCCCCCCGTTTAGTTGACATGAATGGTTAAAGGGAAATGTCCAAATCCAT
GTCTTATTATTTTCAATAATCCATACTTGTAGCAATGAAATACTATATATTCCTACACCAAGTAATAAACGGTTGATTACAAATAGTTAGGATATATTTT
GACTTTCTCTATCTATAAAGGCCCAGAAATACCTTTTTTACGTATCATTGGAAAGTGCATTAACATAAATACGGCAGTAAGAAGCGGCAATACAAAAGTG
TGTAAACTATAAAAATGAGTCAAAGTAGATTGTCCCACACTAGCACTTCTGCGCAATAATTCGACCAAAGGTAATCCTATTACAGAAATAGCGTCAGGGA
CACCTGTTACTATTTTCACTGCCCAATAGCCAATTTGGTCCCAAGGTAAGGAATAACCAGTTACGCCAAAAGATATGGTTAATACAGCAAGAACCACACC
TGTAACCAAAGTCAATTCACGAGGTTTTTTAAATCCGTCGGTGAGATACACACGAAATACATGCAGAAT