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Detailed information on CNT3090155


BLAST search results

BLAST vs Swiss-Prot:
sp|P92999|GL118_ARATH, E-value = 1e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515314Solanum tuberosumJuglans regia22.1526.8679.66177forward
CNT3071407Solanum tuberosumQuercus suber16.7757.0282.09134forward

Expression of CNT3090155

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRPIGKTNTSPGCRILVKSLFFIFGPGFDRTKPT*

>peptide 2 (53 aa)
MPRVFNPGKLLTFTGVTADPTLFEVFPGIFRPDLKKSSATTSFGSLQNFPFTKT

Sequence

>CNT3090155
GCCTTCCCTTGTTTTTTTTTTAAATTTTTGTGGATGAAATATCACAAACAATAAACTTATTTGTATTCCATAACACAAACCACACACATATATCCTCATC
CAATACATCACACTAAAATGGAGAGGAAATTAAACAAGTCGACATGATCAATACTTATTTAGTAATTTTGTGACACAAGCGGTTCACAAAACCATAATTA
TTCGTAGATCATATATTTTTTGAAATAACGTTTTAGTTGTTATCCCACCAGAATTGTGATTGGAGGTAATCCACAACTTTGTTCTCAATTTGGAATGCTT
TGGCGAGGACATCGTCATTGATTGGTGGATCTGATCCAAATACTGCATTTGCAATAGTAATGACTCCTGGATTTTGACTACTGAGTCCAGCAAATGCAAC
AGTCTTAGTCTTTCCTGGGTTGAATTGAAAATGAATGAGACCTATTGGGAAGACAAACACATCTCCAGGATGTAGAATTTTGGTAAAGAGCTTGTTCTTC
ATATTTGGACCAGGGTTTGATAGGACAAAACCAACATAGAGTGTTCCCTCAAGGACAACAAGAAACTCAGTTCCTCTAGGATGCGTGTGCGGCGGGTTGA
GACCGTACGGTGCATAATCAATACGAGCTAAAGAAATGCCTAGAGTGTTCAATCCTGGTAAGTTGTTGACGTTCACAGGAGTTACTGCAGATCCAACATT
ATTTGAAGTATTTCCAGGCATATTCAGACCCGATTTAAAGAAATCCTCCGCCACAACAAGTTTTGGATCCTTGCAAAATTTTCCGTTCACAAAAACTGC