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Detailed information on CNT3090146


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QXJ4|GL121_ORYSJ, E-value = 9e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515168Solanum tuberosumJuglans regia17.0830.1181.68131forward
CNT3019818Solanum tuberosumCitrullus lanatus10.4327.0387.580forward
CNT30382100Solanum tuberosumManihot esculenta17.0825.8981.68131forward
CNT3045720Solanum tuberosumPrunus dulcis17.4722.3383.58134forward
CNT30155140Solanum tuberosumPrunus persica8.082087.162forward
CNT30573105Solanum tuberosumVitis vinifera17.8622.6483.21137forward
CNT30706383Solanum tuberosumPrunus avium17.4721.3481.34134forward
CNT3031606Solanum tuberosumTheobroma cacao17.9930.3385.51138forward
CNT30726724Solanum tuberosumLupinus angustifolius15.5125.1182.35119forward

Expression of CNT3090146

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVQNQYELKKCPNVESCQVIDIHCSYSRSKLI*

>peptide 2 (34 aa)
MRPTGKTNTSPGCRILVKSLFFIFGPGFERTNPT*

Sequence

>CNT3090146
ATCGGTTTATAATCATAGTTAACATATCACAATAAACGGTAAACATAATTTTACTATAAAAGAAATCCTTGTTTAGTACATCCAATAACAAATATATCAA
TGAAACCAGTCCATAAGACTAGATCATGATATTTATTTATGATTTTTTAAATCCAAAACATAAGCACACATAATATATAGCGCCAAATCAAAGTATTATT
TAATTTAGTTGTTGTCCCACCAGAATTGTGATTGAAGATAATCGACAACTTTCTTGTCAATTTGGAATGCTTTTGCAAGAACATCATCACTGATTGGTGG
ATCTGAGCCAAATACTGCATTCGCAATAGTGATGACTCCTGGATTTTGGCTACTAAGTCCAGCAAATGCAACTGCATTAGTCTTTCCCACATTAAATTGA
AAATGAATGAGACCTACTGGGAAAACAAACACATCTCCAGGATGTAGGATTTTGGTAAAGAGCTTATTCTTCATATTTGGACCAGGGTTTGAAAGGACAA
ATCCAACGTAGAGTGTACCCTCAAAGAGGGCAAGAACTTCAGTTCCTCGAGGGTGAGTATGAGGTGGGTTGAGACCGTATGGTGCAAAATCAATACGAGC
TAAAGAAATGCCCAAATGTTGAGTCCTGCCAAGTTATTGACATTCACTGCAGTTACAGCAGATCCAAGTTGATTTGAAGTATTTCCGGCCATGTTCAGTC
CGGGTCTGAAGAAGTCATCAGCAGTGACATCCATTGGATTCTTGCAAAATTTTCCATTCACGAAAAC