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Detailed information on CNT3090117


BLAST search results

BLAST vs Swiss-Prot:
sp|P33081|AX15A_SOYBN, E-value = 2e-33

BLAST vs NONCODE:
NONSLYT000535, E-value = 5e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30560988Solanum tuberosumActinidia chinensis25.323.6584.25127forward
CNT3089315Solanum tuberosumVigna radiata21.3113.7284.11107forward
CNT30508285Solanum tuberosumSolanum lycopersicum68.9289.8793.64346forward

Expression of CNT3090117

Peptides detected in this lncRNA

>peptide 1 (89 aa)
FITSISFEVEKCVLIYLVFLLTLNCTQWSSWLTTTIQNCVTKKWGLVSFSLPQSRCEIDEQILTAGNSHTTHWMVEAKFFLSLTKQVLK*

>peptide 2 (45 aa)
MCPYLPSVSSNSQLYTVEFLAYYNYTKLCNEKMGTSFLLTSSIEM*

Sequence

>CNT3090117
GTTTCATTACTTCAATTTCTTTTGAAGTAGAAAAATGTGTCCTTATCTACCTAGTGTTTCTTCTAACTCTCAACTGTACACAGTGGAGTTCCTGGCTTAC
TACAACTATACAAAATTGTGTAACGAAAAAATGGGGACTAGTTTCCTTCTCACTTCCTCAATCGAGATGTGAGATCGATGAACAAATCCTCACTGCAGGG
AATAGTCACACCACCCATTGGATGGTCGAAGCCAAATTCTTCCTCAGCTTGACTAAGCAAGTCTTGAAATAAAGGTTGGCTCAAGAATGAAATGGGGATT
ACAAATCTCTTCTTCTGCTTTTCCCCAACATAAACAGCAAAGTGGCCTTTAGGAACATCTCCGGTTGTAGAGGACTTCTTGATTATACGAGGCATACGGA
TAGCCATGGTCGTTTAGTTCAATATAAGATGAGAAAATAAGGATGGGGAGAATTAGTAAAGACTCTGAAAGCAGAGAAAGCTTTGTATGGTTTCAAGTTT
TG