Detailed information on CNT3090025


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2VEF7|RK33_SOLTU, E-value = 3e-40

BLAST vs NONCODE:
NONMTRT000970, E-value = 7e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200777Solanum tuberosumPisum sativum6.6634.6283.33162reverse complement
CNT3047380Solanum tuberosumPrunus dulcis4.1927.1387.25102forward
CNT30145466Solanum tuberosumMedicago truncatula5.5137.3388.06134reverse complement
CNT3017135Solanum tuberosumZea mays5.4228.0389.39132forward
CNT30608460Solanum tuberosumGossypium raimondii4.640.5889.29112reverse complement
CNT30202556Solanum tuberosumHelianthus annuus4.4432.7399.07108forward
CNT30623957Solanum tuberosumDaucus carota3.2928.7887.580reverse complement
CNT30360854Solanum tuberosumLactuca sativa19.3188.5184.47470reverse complement

Expression of CNT3090025

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSRVQILSSLPITAPLSSNEGSLEIASNWT*

>peptide 2 (31 aa)
WFVCLIYSLSLKSYFFILIHFKSTQNRIFQK*

>peptide 3 (57 aa)
MYNDSGNKIFLFLKQKKKIHPLLSYREFPKKTNLFLRRVLYLYILYIIVYKYFLYNL*

>peptide 4 (44 aa)
MYWGYEKNPFVYSLIYSDKKALLVQFGRTWVSKTRCRRFKSYRA*

>peptide 5 (31 aa)
MWRSLVARLFWVQNVTGSNPVIPTYYCSFEQ*

>peptide 6 (30 aa)
MNLNDNEQELTIGNVSKYRIHVIPQKDFFL*

>peptide 7 (29 aa)
MSRNLYISMEEITMWKTRQEFSTITLWNN*

>peptide 8 (43 aa)
MRPKRRNEQKFVYINGGNNHVENKTGILYNYTVEQLKGCGAAW*

>peptide 9 (42 aa)
MNLLWIFDLLNSSIFDSKRRKDKIEITNLKSNSKSKRLKSRK*

>peptide 10 (34 aa)
MNRMFVTIGAEFFQFKSIRRIVPVLLSNISGNTS*

Sequence

>CNT3090025
ATGGTTTGTTTGTTTAATTTATTCCTTATCCCTAAAATCCTATTTCTTCATTCTAATTCATTTTAAATCCACTCAAAATAGGATTTTTCAAAAATAGGAT
TTGTTTATTTTCTATTTAAATATGTTATATATATAATGTCATTTTTTCCCCTTCCTTGAAAGGGTAAGACACAGGTACTTGGTTCGCTCTATTTCTTTAT
CTCCCCATGAATCGTATGTTTGTAACAATAGGGGCAGAATTTTTTCAATTCAAATCGATTAGGCGTATTGTGCCGGTTCTTTTGAGTAATATATCTGGAA
ATACCTCTTGATACCTTATCAACACTGTTTCGGACACAACTAGTACATTCCAAAATCACCGTTACTCGGACATCTTTCCCTTTGGCCATGAACCTCCTTT
GGATTTTTGATTTACTCAACTCTTCTATTTTCGATTCAAAACGAAGAAAGGATAAAATAGAAATTACTAACTTGAAATCCAATTCTAAAAGTAAAAGATT
AAAATCACGAAAATAAAGTAATAGTAAAGCAAAGTCATAGTAAAATACAACGATTTTTCTAAAGTATATTTCAAATTGAAGTAATCATTTAAGTATCTTG
TATAATACTCTTGCCCTAGACCCCCATTTTCTATTCTACCCCCATTCCTCTATGATTAATATTCAGTTAATTCGAACTTGAGCCCGAATGTTGAATCGAC
TTTTTTTATTCTTTCTCTTTCCTCCCTTATTCTAAAAAGGGAAAAAAGAGAAAAGAGGGGGAGAGGGATTCATCACCAATATTTGATTGGATCTCTAATT
TTCTTCATTCCTTCCCATGACAATAACTAGAATTAAAAAAAGGGGAATGTCAACGCATCCGGGAAAAAACGATTAATCTCTATCAATAGACCTGCTAAAG
CCCCGAACCATAGCGTACTTAGTACTGGTGCCACAGAGAGATATGTTTTTAGATCTCGCATTGAAAAACCTCCTTCTTTTGTATTATTTGTTGGAATAGA
TAATACATATATGATCAGATGCATATGTAGTTAAGGGCTGCTTAGAGTTGGACACAGAATTCCTAATTCAAATTGAAATGTACAATGATTCGGGAAATAA
GATTTTCCTTTTCTTAAAACAGAAAAAAAAAATACATCCCCTTCTTTCTTACCGAGAATTTCCGAAAAAGACTAATTTATTTTTACGACGGGTTCTGTAT
TTATATATTTTGTATATAATTGTATATAAGTATTTTCTATATAATCTATAAGAGAAGTCTTTTCCCTTTACTATTATATGTTAAATGAGACCAAAAAGAC
GAAATGAGCAGAAATTTGTATATATCAATGGAGGAAATAACCATGTGGAAAACAAGACAGGAATTCTCTACAATTACACTGTGGAACAATTGAAGGGATG
TGGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAATCCTGTCATCCCTACCTATTACTGCTCCTTTGAGCAGTAACGAGGGA
TCACTTGAGATCGCTTCAAATTGGACATAATCTTTGATTTTTATCATGCTATTCTAGTATATGCATACAAAATGTATTGGGGTTATGAAAAGAATCCTTT
TGTTTACAGTCTTATCTATTCTGATAAGAAAGCGCTCTTAGTTCAGTTCGGTAGAACGTGGGTCTCCAAAACCCGATGTCGTAGGTTCAAATCCTACAGA
GCGTGATTTTTTTCTTCTTAGATCGAATTAGAATAAAATAGATCCATTCAGTAACTTTCACAACAATCGGAATTTGACCTCCTGTGCCTGTGAATTAAAG
AAAGGAGGAGGTCAATCAAAAATAAATGTTAATTAATCAAAGGTCCAACTGATCACCACGCCTATATTGTAAATATGCAGTTACGAATAATCCAGCCAAA
GTAATAGGAATTAGACCTAACACGATTCCAAATAGAAAAACTTCAATCATTTTTTTTTGTTTGAAAGTAGAAAAAAAAATAGGTAATATCGGTACCTAAA
TATTAATCCGAATTGACATGAATCTCAATGACAATGAACAAGAATTGACAATTGGTAACGTAAGTAAATATAGAATACACGTAATCCCACAGAAGGATTT
CTTTTTATGAATTGTTCATTTTAAATATTCAATTTAAATAAGTCGTATCTTGCTCAGACCAATAAATAGAGCTGAGGTTATAGTTAAAGCCGCTAATAGA
AAACCGAAATACCTAGTTATAGTAAGCATGAAGGGGCTAAATTAAATGAAATATTTTCTTTTTATACATATGTTTAAAAAGCACTTACCTAAGTTTCAAA
TTTTGCAAAAGAAAATAGGAGGGTAGACAAAAATCTCAATTTCAATTGAAAGAATAAGTTGAATGAAAAGTTTTTGATTCAGCTATTATTATAGGCAGAC
AGCACTAACAAAGATAAATTGCCAGACATATAAA