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Detailed information on CNT3089988


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LHJ8|SAP5_ARATH, E-value = 4e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30170299Solanum tuberosumPistacia vera33.411.381.25176forward
CNT30430655Solanum tuberosumPapaver somniferum21.25683.04112forward

Expression of CNT3089988

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MTIGVSMFTAEQFAAPASESGQSYLPSTTGATIHLSLSRRLPVRQRPQRAESRRFFRSDQFLSELVRNRHRRPRRRAG*

>peptide 2 (34 aa)
KKDAVFVLSFQTLMIFAAFTTGFSLAIASRPAVL*

Sequence

>CNT3089988
GTAAAAAGGACGCGGTTTTCGTGTTATCCTTTCAAACTTTAATGATTTTTGCTGCTTTCACGACCGGATTCTCCCTCGCGATCGCTTCTCGGCCGGCGGT
TTTGTAGTCGTAGTTACAATCATGACGATCGGAGTATCGATGTTCACCGCAGAACAATTCGCCGCACCGGCATCGGAATCCGGTCAATCCTACCTTCCTT
CGACAACCGGAGCAACGATTCACCTCTCTCTTAGCCGGCGACTTCCTGTCCGGCAACGACCTCAACGAGCTGAATCTCGCCGATTTTTCAGATCTGACCA
ATTTCTCAGCGAACTTGTGAGGAATCGTCACCGCCGACCCCGTCGGCGAGCTGGATGAAGTTGAGGTAGCCGCGGTGGTGGCGTTGAAGCACTTTTGACA
CATATTGTTTGTGGCTGGATTTCCTGTGACTCCACAATTGATGCAAAGCGTTATAGTTTCAGGTGCTACGTGACATAAAGTTATTCATGTAGAAGTTCTA
GATTGGAAGAAGGTTATCTCATATTGG