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Detailed information on CNT3089926


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1XBU5|TPS5_SOLLC, E-value = 2e-47

BLAST vs NONCODE:
NONORUT000586, E-value = 3e-116

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672164Solanum tuberosumSetaria viridis15.8742.2495.73351reverse complement
CNT30378673Solanum tuberosumArabidopsis thaliana15.8228.0797.43350forward
CNT30283003Solanum tuberosumChenopodium quinoa15.8236.6597.71350forward
CNT30162096Solanum tuberosumPistacia vera5.6542.0999.2125forward
CNT30306129Solanum tuberosumTriticum aestivum15.8728.1997.44351reverse complement
CNT30219690Solanum tuberosumHordeum vulgare15.8751.2497.44351forward
CNT30396495Solanum tuberosumTriticum turgidum15.8721.7997.44351reverse complement
CNT30543267Solanum tuberosumBrassica napus15.7825.5597.42349reverse complement
CNT30437461Solanum tuberosumAegilops tauschii11.4493.797.23253forward
CNT30660235Solanum tuberosumTriticum dicoccoides12.9730.595.82287forward
CNT30605073Solanum tuberosumGossypium raimondii15.8223.0396.57350forward
CNT30715685Solanum tuberosumMalus domestica golden12.9323.589.51286forward
CNT30626675Solanum tuberosumDaucus carota8.4127.0798.39186forward
CNT30688990Solanum tuberosumTriticum urartu13.8821.897.07307reverse complement
CNT30346086Solanum tuberosumEragrostis tef15.8746.3197.44351reverse complement
CNT30595568Solanum tuberosumOryza meridionalis5.2429.996.55116forward
CNT30359771Solanum tuberosumLactuca sativa15.8233.4998350reverse complement
CNT30571801Solanum tuberosumVitis vinifera15.8226.8298.29350forward
CNT3058010Solanum tuberosumAmborella trichopoda3.6626.1393.8381reverse complement
CNT3038287Solanum tuberosumCucumis melo15.2422.4897.63337forward
CNT30331625Solanum tuberosumDioscorea rotundata10.5873.5894.87234reverse complement
CNT30151167Solanum tuberosumBrachypodium distachyon5.3820.3896.64119forward
CNT3099535Solanum tuberosumOryza rufipogon5.2454.9896.55116reverse complement
CNT30557400Solanum tuberosumPanicum hallii15.5525.0796.22344reverse complement
CNT3039925Solanum tuberosumMarchantia polymorpha14.1563.193.93313reverse complement

Expression of CNT3089926

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVLSSALVYSTCSPVSVWGTVSSPGGSPSQFEVGNITPFQFILN*

>peptide 2 (46 aa)
MHGVIPKELQLKSMHYSCTLLVLAYIHCGTILLLVSTLCINLPTNL*

>peptide 3 (65 aa)
MSGYLFKDSNASKVIGLVTKMNAWSNTKGIAIEIHALFMYSSSVGLYPLWYHLASCKYALHKSAH*

>peptide 4 (72 aa)
CYIRTVRATAAVYRGFHSKLITLLLPTFQHRAGVRLYTLCYHLAESCVFNKQSLPPGMCRFPNQKIGEHPFS*

>peptide 5 (42 aa)
MNEYMKINIYDVLINYILHVLTLKPSITINITTNLTFYTLKF*

>peptide 6 (39 aa)
MLIYHSVSDLGIIQCLGSSKAWTTNSTIIFSSALQLLST*

>peptide 7 (30 aa)
MINYILHVLTLKRSITINITTNLTFYTLKF*

Sequence

>CNT3089926
CTTGCTACATTAGGACAGTTAGAGCTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGG
TGTCAGACTCTATACATTGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATA
GGAGAGCACCCCTTCTCCTGAAGTTATGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGT
CGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCACAATTCGAAGTTGGGAACATCACCCCTTTTCAATTCATCCTAAATTAACACAACACATT
TTATTTTTTTTAAAAAACGCATCTAAATTAAGTTATATTAAATAAAAAAGTCATATGAATTTTATCTGAGAAAAAGGTATTAGAACATTCCGATGATGTC
CCCAAATCATCAACGAAACGAGTAATTGTAGCACATCGACGAATTATGTCTGGATATTTGTTTAAGGATTCCAATGCCTCTAAGGTTATTGGATTGGTGA
CAAAGATGAATGCATGGAGTAATACCAAAGGAATTGCAATTGAAATCCATGCATTATTCATGTACTCTTCTAGTGTTGGCTTATATCCATTGTGGTACCA
TCTTGCTTCTTGTAAGTACGCTTTGCATAAATCTGCCCACTAATTTATAGTAACTTGTTTCAAATATATATAATAGTGTTTCATAAATTATATAATTAAA
TTCTGGATTCACAATTTCAAAAGTAAAACAATTTAAATGATAAGAACCTTTTGAAGGTTGAATCGACCAAATTTAAATACTGATTCTGTCTCAAAGATAA
AAGAATGGAATTGACAAAGATTGTAATTTTACTTGTTTTGTGAGGTATGGAAGGACATTAATCCCTTGTTGTTTGAGAATATGACAGGCCATTTCATTGG
TAGTGTTGAAGAGTGAAAGGTAACATATTTTCATGTAGTCTGGAAGCTGCTCCATTGCTTTTATATCCCATCTGAATTTATATTACAAGAAATCAAAATT
CCACATGGCAAAAACATGCTGACAAGGAATTAGTACTAAAAACTATTAACATTATAAGTTAATAACTGACCTTTCAACGGCCTGAGTGAAGATTTCTAAC
TCATCAAGAGTGCCATAAACATCATAAATGTCATCTATGACTACTATTAAAGAAATATTTTTCGCCAACATTCTTCGACAGAAGCTGTGTTGAGGCTCAA
ATACTAAACCCACTGACCAGAAAAAGGCTTCAACTAGTCTATCCCTTGAAAATGAATACTTCTCTGCCAAACGTGTGCTCTTCCACCACCTTTACATGAA
TGAGTGCATGAAAATAAATATATATGATGTATGATAAATTATATTTTACATGTTTTAACTCTTAAGCGATCCATAACAATAAATATAACGACGAACTTAA
CCTTTTATACGCTGAAATTTTGATACTATCAACTCACTTAAAAGATATATGAATTGAAGGATATCTCACGTTGATAGAATTTTCAAATCTTGTTGCTGTG
TTGAGGCTCAAATACTAAACCCACTGACCAGAAAAAGGCTTCAACTAGTCTACCCCTTGAAAATGAATACTTCTCTGCCAAACGTGTGCTCTTCCACCAC
CTTTACATGAATGAGTACATGAAAATAAATATATATGATGTATTGATAAATTATATTTTACATGTTTTAACTCTTAAGCCATCCATAACAATAAATATAA
CGACGAACTTAACCTTTTATACGCTGAAATTTTGATACTGTCAAATCACTTAAAAGATACATGAATTGAAGGATATCACACGTTGATAGAATTTTCAAAT
CTTGTTGGTGTGTTGCTTGAACAATGTTGAAGTCCAATTTAGCAAGCTCTAACAAAAGAGGATTAGCATTTGACATTCTCTCGTAAATGCTAATATACCA
CTCTGTCTCTGATCTTGGCATCATCCAATGTCTTGGAAGTTCCAAGGCATGGACCACTAATTCCACCATTATATTCTCTTCTGCATTACAATTATTATCA
ACATAGCTCTTTAGATATGTCAATGTGGATTTTGTCGTATTTCTCAAAGAAGTTTCATTTTCTGTAAAGAGAAACGATGCTTCATATAATTCTAACAATC
CTTTTGTGTCAT