Detailed information on CNT3089856


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 1e-105

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677083Vigna radiataSetaria viridis56.2232.8291.06235reverse complement
CNT30378667Vigna radiataArabidopsis thaliana48.818.2397.06204reverse complement
CNT30525072Vigna radiataPhaseolus vulgaris27.5126.9399.13115forward
CNT30511396Vigna radiataSolanum lycopersicum85.6539.1393.3358reverse complement
CNT30483432Vigna radiataChara braunii31.8265.290.98133reverse complement

Expression of CNT3089856

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSSQLLRLNAFRGEPASSGFGSISSDNCPIKTRFRYDSGGFP*

>peptide 2 (32 aa)
MSXRLILQQARGQSTGLSLIASSHCLGAYGFMF

Sequence

>CNT3089856
AGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTAGCCGACCTTGACTCTTGTTATTTTGAGGTCA
TATCTAGTATTCAGAGTTTGCCTCGATTTGGTACTGCTCTCGCGGCCCGCACCGAAACAGTGCTTTACCCCTAGATGTCTAGTCAACTGCTGCGCCTCAA
CGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGGGTCCATAAGCAGTGACAATTGCCCTATAAAGACTCGCTTTCGCTACGACTCCGGTGGTTTCCCT
TAACCAAGCCACTGCCTATGAGTCGNCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTACCGGACTGAGCCTTATAGCCTCCTCCCACTGCTTGGGAGC
TTACGGTTTCATGTTCTA