Detailed information on CNT3089447


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000392, E-value = 7e-137

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698389Vigna radiataQuercus lobata77.0255.8589.65821reverse complement
CNT30500372Vigna radiataCoffea canephora76.9276.7186.83820forward
CNT30618591Vigna radiataSesamum indicum42.561.7293.16453forward
CNT30283133Vigna radiataChenopodium quinoa45.8759.6392.02489forward
CNT30730547Vigna radiataCorchorus capsularis77.1171.8590.63822forward
CNT30639035Vigna radiataCapsicum annuum77.0266.3288.43821forward
CNT30622585Vigna radiataCajanus cajan51.6959.8990.2551forward
CNT30424816Vigna radiataPapaver somniferum77.362.0989.08824forward
CNT30175070Vigna radiataVigna angularis47.2846.9394.84504forward
CNT30726571Vigna radiataLupinus angustifolius52.0664.0192.79555forward

Expression of CNT3089447

Peptides detected in this lncRNA

>peptide 1 (44 aa)
AKTLLTRPQVRRGYPLSLSISISGGKETNKDSLSNXERTGNSPP*

>peptide 2 (40 aa)
MQPQSGGKFRPRLNTGERPIANKYREGKMKRTLKRESKSA*

>peptide 3 (33 aa)
MRIGRPYRSNCNLEKRPQWRTEPKSPRRGRQRG*

>peptide 4 (62 aa)
MLSFLFNNLPTMETAQPEVGSSGWKSTARRVVSGAPPAALENPEDRVPPTPGRTHNRIRSPR*

>peptide 5 (30 aa)
MCASQQVSKPVRRKEADWWDPLVGCTADRP*

>peptide 6 (33 aa)
MCLGRMWNXHSRSADRLETLTDADCDGGLSPGC*

Sequence

>CNT3089447
GCAAAGACGCTCTTAACGAGACCTCAGGTCAGGCGGGGCTACCCGCTAAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTTA
GTAACNGCGAGCGAACCGGGAACAGCCCACCATGAGAATCGGTCGCCCCTACCGTTCGAATTGTAATCTGGAGAAGCGTCCTCAGTGGCGGACCGAGCCC
AAGTCCCCTAGAAGGGGGCGCCAGAGAGGGTGAGAGCCCCGTTGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGGCGAGTCGGGTTGTTTGGGAAT
GCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGCTAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGGGAGGGAAAGATGAAAAGGACTTTGAAA
AGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGGGCCGGCGATGTGTCTCGGTCGGATGTGGAACGNTCATAGCCGGTCTGCCGATC
GACTCGAGACATTGACCGATGCGGATTGTGATGGTGGCCTAAGCCCAGGTTGTTGAAATGCTTGTGGAGACGTCATCGTTGTGATTGTGGACGGCAGCAC
GCGCCTTAGGCGTGTCTCGGCACGTGNGTGCTCCGGGCATCGNCCTGTGGGCTCCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTG
TGCGAGTCAACAGGTGAGTAAACCCGTAAGGCGTAAGGAAGCTGATTGGTGGGATCCCCTTGTGGGTTGCACCGCCGACCGACCCTGATCTTCTGTGAAG
GGTTCGAGTGAGAGCATACCTGTCGGGACCCGAAAGATGTTATCTTTTCTGTTTAACAACCTGCCCACCATGGAAACGGCTCAACCGGAGGTAGGGTCCA
GCGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCTCCCACGCCCGGTCGTACTCA
TAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGTCAATGGAACAATGTAGGCAAGGGAAGTCG