Detailed information on CNT3089385


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697161Vigna radiataOryza sativa17.930.8890.4863reverse complement
CNT30349956Vigna radiataEragrostis tef18.4725.189.2365reverse complement
CNT30596024Vigna radiataOryza meridionalis17.923.4290.4863forward
CNT30370879Vigna radiataOryza glumipatula17.927.2790.4863forward
CNT30100349Vigna radiataOryza rufipogon19.3230.2291.1868forward
CNT30577044Vigna radiataOryza barthii17.922.1890.4863reverse complement

Expression of CNT3089385

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MHFRDIGSQINSFKLSFNCIVPYLYSLQIPLIPVYVRFVHVPLPLEACQEPLLVRAPCTMPLAPTITPRPRQCLGVT

>peptide 2 (41 aa)
MFDSSMCPFHSKPARSRSLSVPPAPCLLHRRSLPALVSAWVS

>peptide 3 (34 aa)
LCPHSHTFRENFPEGHPSQNYSRLSTLNHGVLMG*

Sequence

>CNT3089385
GCTTTGTCCTCACTCGCACACTTTCCGGGAAAACTTCCCGGAAGGTCACCCATCCCAGAATTACTCCAGGCTAAGCACGCTTAACCATGGAGTTCTTATG
GGTTAGGCTACCGAAAAGTAAATGCATTTTCGTGATATAGGTAGCCAAATCAATTCCTTTAAGCTATCCTTCAACTGTATAGTCCCATACCTATACAGTC
TCCAGATCCCTCTCATTCCGGTGTATGTTCGATTCGTCCATGTGCCCCTTCCACTCGAAGCCTGCCAGGAGCCGCTCCTTGTCCGTGCCCCCTGCACCAT
GCCTCTTGCACCGACGATCACTCCCCGCCCTCGTCAGTGCCTGGGTGTCACA