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Detailed information on CNT3089384


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBU3|PSBA_LOTJA, E-value = 1e-120

BLAST vs NONCODE:
NONMTRT000175, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Vigna radiataOryza sativa69.3344.5490.76563forward
CNT30378681Vigna radiataArabidopsis thaliana63.7953.7992.66518forward
CNT3021612Vigna radiataCitrullus lanatus11.4545.8195.793forward
CNT30198744Vigna radiataPisum sativum40.0289.2993.23325forward
CNT30300480Vigna radiataTriticum aestivum69.3342.9891.47563forward
CNT30391503Vigna radiataTriticum turgidum27.8345.290.27226forward
CNT30540528Vigna radiataBrassica napus69.3346.8893.07563forward
CNT30555706Vigna radiataOryza glaberrima69.3382.1990.05563forward
CNT30145403Vigna radiataMedicago truncatula31.2894.4295.67254forward
CNT30598581Vigna radiataFraxinus excelsior15.0234.5691.8122forward
CNT3018289Vigna radiataZea mays69.4621.7389.89564forward
CNT30626343Vigna radiataDaucus carota37.1974.292.38302forward
CNT30684658Vigna radiataTriticum urartu37.6844.0992.81306forward
CNT30360185Vigna radiataLactuca sativa66.1374.992.92537forward
CNT3058320Vigna radiataAmborella trichopoda62.6873.2489509forward
CNT30147990Vigna radiataBrachypodium distachyon5831.1187.26471forward
CNT30102095Vigna radiataOryza rufipogon16.2656.4188.64132forward

Expression of CNT3089384

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MRIVETCILEDQSAKITMSSYNIISFFLLXKSVXFISGFIFCGFPDQTRSYQGTMHSTI*

>peptide 2 (47 aa)
NYEHYVHALLPDWLKLKPFKLKAIVLIPKAINQIPTTGQAARKKCKE*

Sequence

>CNT3089384
AAATTATGAGCATTACGTTCATGCATTACTTCCGGATTGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAA
ATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAATGAGAATTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAG
CTACAATATTATAAGTTTCTTCCTCTTGNCCAAATCTGTANCCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGA
ACCATGCATAGCACTATATAGGGAGCCGCCGAATACACCAGTTACACCTAACATGTGAAATAGATGCATAAGAATATTATGCTCAGCCTGAAATACAATC
ATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAATAG
GAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTACACCAAGTAAGAAGTGCTT
TCGCTCTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCTTGGTTCATTTAATCATTAGGGACTCCCAAGCACAAAAATTCTCTCTAATGCGAGAATT
TGAGGACTTGTTATTCAATAGTATAACATGACTTATATACCAGTGTCAACCAATATTAATATCCATAGTATGTTCTTATTCATTAGTATGTTATTCTTCA
TTTCGGTTTATC