Detailed information on CNT3089382


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST005600, E-value = 7e-172

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530127Vigna radiataEucalyptus grandis44.5263.6491.13203forward
CNT30378684Vigna radiataArabidopsis thaliana94.0842.2290.44429forward
CNT30145113Vigna radiataMedicago truncatula69.396.3490.82316forward
CNT30441777Vigna radiataAegilops tauschii85.3169.0988.17389forward
CNT3059907Vigna radiataArabidopsis lyrata45.8341.0689209forward
CNT30263944Vigna radiataBrassica rapa26.324.995120forward
CNT30606924Vigna radiataGossypium raimondii55.731.0590.16254forward
CNT3067789Vigna radiataLeersia perrieri56.896.6487.26259forward
CNT30655381Vigna radiataRosa chinensis55.4847.2990.91253forward
CNT30627899Vigna radiataDaucus carota93.6433.6591.8427forward
CNT30683192Vigna radiataTriticum urartu85.3138.488.95389forward
CNT30484609Vigna radiataChara braunii45.1852.4281.55206forward
CNT3058324Vigna radiataAmborella trichopoda93.261.5986.12425forward
CNT30117690Vigna radiataOryza nivara40.1357.0190.16183forward
CNT3049694Vigna radiataCucumis sativus25.4439.0692.24116forward

Expression of CNT3089382

Peptides detected in this lncRNA

>peptide 1 (39 aa)
PCSKLHQVRSVEQLVHKDRRCITIHQQKLLPISDKNANL*

Sequence

>CNT3089382
CCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGAAGCTGCTTCCCATATCGG
ATAAAAATGCAAACCTATAGCTATAGAAGTAGGAATAATCGCACCAGAAATGATATTTTTCCATAAAGTAGAGATCTAGAAACAGGCTCACGAATACCAT
CAATATCTANTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAG
ACGATTTTCGGTGGTGGTTATCCAATTACAGAAGCGACCCCATAGGCTTTCGCTCTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCTTGGTTCATT
TAATCATTAGGGACTCCCAAGCACAAAAATTCTCTCTAATGCGAGAATTTGAGGAC