« Back to Vigna radiata search


Detailed information on CNT3089355


BLAST search results

BLAST vs Swiss-Prot:
sp|P48697|RBL_CUCPE, E-value = 2e-75

BLAST vs NONCODE:
NONMEST005601, E-value = 9e-135

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Vigna radiataOryza sativa75.679.7683.37451forward
CNT30678279Vigna radiataSetaria viridis42.6229.686.22254forward
CNT30629265Vigna radiataVigna unguiculata27.6814.5893.33165forward
CNT30201083Vigna radiataPisum sativum76.5121.3689.69456forward
CNT30181337Vigna radiataSecale cereale83.2223.0683.87496forward
CNT30303870Vigna radiataTriticum aestivum83.7255.1482.77499forward
CNT30225281Vigna radiataHordeum vulgare25.3445.0788.74151forward
CNT30565170Vigna radiataActinidia chinensis76.6840.0287.31457forward
CNT30539441Vigna radiataBrassica napus76.519.3387.06456forward
CNT30237627Vigna radiataBrassica oleracea46.6421.9291.01278forward
CNT30554212Vigna radiataOryza glaberrima75.6711.9683.37451forward
CNT30146680Vigna radiataMedicago truncatula35.741790.14213forward
CNT30258531Vigna radiataAvena sativa52.5252.5282.11313forward
CNT3060115Vigna radiataArabidopsis lyrata75.518.9888.22450forward
CNT3017995Vigna radiataZea mays72.6528.0382.68433forward
CNT30680517Vigna radiataTriticum urartu83.7284.2982.77499forward
CNT30477828Vigna radiataArabidopsis halleri49.8358.3590.24297forward
CNT30355674Vigna radiataLactuca sativa53.8643.590.97321forward
CNT30323704Vigna radiataAsparagus officinalis37.2574.7584.68222forward
CNT30121217Vigna radiataCitrus clementina72.6548.2786.37433forward
CNT30578317Vigna radiataOryza barthii37.0845.6683.26221forward

Expression of CNT3089355

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MRQTLESFNISGWDSQRRRARSALNRNTLPTIEVNMLCNITFFKKV*

>peptide 2 (38 aa)
KNVERMYKVCLKLVQRVCKGFINVVQRVYKGCIAVAFK*

Sequence

>CNT3089355
AAAAATGTAGAAAGGATGTACAAAGTGTGTCTAAAGTTAGTACAAAGGGTTTGTAAAGGGTTTATAAATGTTGTACAAAGGGTGTACAAAGGGTGTATTG
CAGTTGCATTCAAGTAATGCCCTTTGATTTCACCTGTTTCAGCCTGTGATTTATAAATCGCTTCAGCACAAAAGAAGAAACGGTCTCTCCAACGCATAAA
TGGTGGGGAATTCACATTTTCATCATTTTTGGTAAAATCAAGTCCCCGACGAAGACATTCATAAATAGCTCTAGCATAATTCTTAGCGGATAACCCCAAT
TTAGGTTTAATAGTACATCCTAATAGGGGACGACCATACTTGTTCAATTTATTTCTCTGAACTTGGATGCCATGAGGCAGACCTTGGAAAGTTTTAACAT
AAGCGGTTGGGATTCGCAAAGACGTAGAGCACGCAGTGCCTTGAACCGAAATACATTACCGACAATAGAAGTAAACATGTTATGTAACATAACCTTCTTC
AAAAAGGTCTAAGGGATAAGCTACGTAAGCAATAAATTGATTTTCTTCCTTCCCTAGCAACAGGTTCGATGTGATAGCATTGTCCTTTGTACACCC