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Detailed information on CNT3089316


BLAST search results

BLAST vs Swiss-Prot:
sp|P33083|AX6B_SOYBN, E-value = 3e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3091021Vigna radiataSolanum tuberosum17.8629.981.97122forward

Expression of CNT3089316

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKVGSSKRWESQTDFVSLQHTRQNSPLVCLQILKMLVLL*

>peptide 2 (29 aa)
MKKFTVFCNPVMLMLYTILIVGKRKNLNA*

Sequence

>CNT3089316
AATTGAGAAATGAAAATGGAATAAAAAGTGAGGTTTTTCCCGAATAAGGATTTTAGGGGGTGGAATCACACGGTGTTGGATGAGATGAAGAAATTCACCG
TGTTTTGTAATCCAGTCATGTTGATGCTGTATACCATTCTAATTGTTGGGAAAAGAAAAAATTTAAATGCATAAACAGACAGAAACGTATAGTATTTGAA
TTCATCATCATTAGTCAGAATTTTGTAATAATAGTTACAAGTTTGAGAAGATGCCTATTGTACAAAATGTCTCTAATAATCTGTCTGTTTCCTAAAGTGA
GACTTATTGTCCCTTGAAAAAAGAAATTGTATGGTGGAAGACATCTTCACTACATGGAATTGTGAGGCCTCCCATTGGATGATCATATCCAAACTCTTCC
TCAGCTTGAATCAGTAAGTCTTGGAATGAAGGTTGGTTCAAGTAAGAGATGGGAATCACAAACCGATTTTGTTTCTCTCCAACATACACGGCAAAATAGC
CCTTTGGTATGTCTTCAGATTTTGAAGATGCTTGTCTTGCTGTGAATGATGATGCCCGTCGGATGGCAGGTAAACGGAAACCCATTTTTTGAGCTCGTTT
AAGGAAGAAGAACAATCTCAAATCTACAGAGAATGAATCCAAATTTTGATGCTAGAGGATTCCGAAGGATAGTGTAGTTTTTG