CANTATAdb - search

Detailed information on CNT3088525

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMTRT001024, E-value = 4e-139

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30316435	Vigna radiata	Corylus avellana	50.72	96.21	82.36	737	forward
CNT30512897	Vigna radiata	Juglans regia	51.96	76.49	82.65	755	forward
CNT30609009	Vigna radiata	Gossypium raimondii	53.41	81.34	82.6	776	forward
CNT30120117	Vigna radiata	Citrus clementina	45.01	96.32	83.33	654	forward

Expression of CNT3088525

Peptides detected in this lncRNA

>peptide 1 (40 aa)
GPTIFQLLPSKNKPLLIWWDALLVLNLCLHIINCIRAFHL*

>peptide 2 (31 aa)
MYMGSLANNKHITESIRPQTLVQTTDSSPHK*

>peptide 3 (30 aa)
MVFPVRVFTNICIPPRSLNTKCRVDSFWML*

>peptide 4 (30 aa)
MVFPVKVFTKICMPPRSLKTKCKVDSFCML*

Sequence

>CNT3088525
GGTCCGACCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGAATCTTTGTCTTCACATTATCAATT
GTATCAGAGCTTTCCACCTCTAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACAAATATCTGCATTCCACCACGAAGCCTCAACACCAAGTGCAGAGTAG
ATTCCTTCTGGATGTTATAATCTGCAAGGGTACGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGTCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTC
CTGAATCTTTGCCTTTACATTGTCAATAGTGTCAGAGCTTTCAACCTCCAAAGTTATGGTTTTCCCAGTTAAAGTCTTCACAAAAATCTGCATGCCACCA
CGAAGCCTCAAAACCAAGTGCAAAGTGGATTCCTTCTGTATGTTATAATCCGCAAGGGTCCTTCCGTCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCT
GCTGATCTGGGGGTATACCCTCCTTATCCTGAATCTTAGCTTTCACATTGTCAATTGTATCTGAACTCTCCACTTCCAAGGTTATGGTTTTTCCAGTCAA
AGTCTTTACAAAAATCTGCATACCACCCCTTAACCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTCCCATCCTCA
AGTTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTA
CTTCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCATCTGTTCAATCAGAAACTAAACCGTCAATAACATAGATACGAAGGCATAGTT
CAACCGCATACTCTAGCCTTAGAAATGACAAAAGAGTTCAAATAACAAACCCCTAATTATAAACCGAGGATGTATATGGGAAGTTTGGCTAACAACAAAC
ATATTACAGAATCTATCAGACCACAAACTCTAGTTCAAACCACAGACTCCAGCCCCCATAAATGACTAAAAATAATTGAATCACAAACCCTAAATTAAAA
ACCGAGAAAGTATACGGGACATTTTGCAAGAAACAAACAGAGTACAGACCCAATCAGACCACAAACGACAGGTCCTTAAAAATTATAAAACAAATTAAGT
CAGAAACCCTAATTAAGACAGAAAAAATATTGCATGAAACAAACGTATTAAAGAACAAGAAAAGGTGACATTATCAATCCTAGTTCCACGACCAAAAAAG
AAATTCCACCAACAAAGTAAAAGATCGAATATGGATATGATCAGCGAGGAAGACCAAAGTATAACTAAATAAACTGAAGCTAATCAGTACCTTGAAAAAT
TGAGACGGAAAGTGGAATCGGAGGATTAAAAAGAGCAAGGGTTTTGAGATTGA