Detailed information on CNT3088372


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT02|PDR2_ARATH, E-value = 3e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672872Vigna radiataSetaria viridis17.5221.5884.8179forward

Expression of CNT3088372

Peptides detected in this lncRNA

>peptide 1 (59 aa)
RMTHIVHSECCHLKHHAHHIRNSIHQVNRKLPQKRKENISTEDVGVRTFSRKTWKRTCM*

>peptide 2 (89 aa)
MKRKNAAVNTPLIVACTSPSFTPSRYITLNTYAVARQLRPRILNIWRVVTRVLRPWRIMSVVGATDACLAVNGDAIEASPSFTMGARPSP

Sequence

>CNT3088372
CGGATGACCCATATAGTTCACAGCGAATGTTGCCACCTGAAGCATCATGCTCACCATATACGAAACAGTATTCACCAGGTGAATAGAAAATTGCCCCAAA
AGAGAAAGGAAAACATAAGCACAGAAGATGTTGGGGTGAGGACGTTCAGCAGAAAGACTTGGAAGAGGACGTGCATGTGAGATGAAGAGGAAAAATGCAG
CAGTGAATACTCCACTTATTGTAGCTTGTACGTCACCTAGCTTCACACCATCCAGATACATAACACTCAACACATATGCAGTAGCAAGACAATTGAGACC
CAGAATTTTGAACATCTGGAGGGTAGTAACTAGAGTACTCCGACCTTGGCGAATTATGTCAGTGGTAGGAGCAACAGATGCATGCTTAGCAGTGAATGGA
GATGCCATTGAGGCATCACCAAGCTTCACAATGGGTGCACGACCATCTCCT