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Detailed information on CNT3088158


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523179Vigna radiataSetaria italica7.0623.9186.3666reverse complement
CNT30143656Vigna radiataMedicago truncatula28.6624.2180.6268forward
CNT30600026Vigna radiataFraxinus excelsior11.2325.2486.67105forward
CNT30576113Vigna radiataOryza barthii5.5620.3992.3152forward

Expression of CNT3088158

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MFDSSMCPFHSKPARSRSLSVPPAPCFLHRRSLPALVSARVSHDPLITV*

>peptide 2 (31 aa)
MEFLRVRLPKSKCILVIWVAKSIPLSYPSTV*

>peptide 3 (34 aa)
MRESKVGFRDIMLVFTLFCTVLMRIEEGSKSRWT*

>peptide 4 (77 aa)
MHFGDMGSQINSFKLSFNCIVPYLYSLQIPLIPVYVRFVHVSLPLEACQEPLLVCAPCTMLLAPAITPRPRQCPGVT*

Sequence

>CNT3088158
CTTATATGACCTGTAACGCCCCGGCAACTTACAAGGATTGCTGACTGCCCCCACAAATCACCACGAGACTTTTCAGTGTGCTTTGTCCTCACTCGCACAC
TTTCCGAGAAAACTTCCCAGAAGGTCACCCATCCCAGAATTACTCCAGGCTAAGCACGCTTAACCATGGAGTTCTTAAGGGTTAGGCTACCGAAAAGTAA
ATGCATTTTGGTGATATGGGTAGCCAAATCAATTCCTTTAAGCTATCCTTCAACTGTATAGTCCCATACCTATACAGTCTCCAGATCCCTCTCATTCCGG
TGTATGTTCGATTCGTCCATGTGTCCCTTCCACTCGAAGCCTGCCAGGAGCCGCTCCTTGTCTGTGCCCCCTGCACCATGCTTCTTGCACCGGCGATCAC
TCCCCGCCCTCGTCAGTGCCCGGGTGTCACATGACCCGCTGATAACGGTCTAAAAACCGTTATTTTCATACTTAAATTTGATATGAAAACACACCCTTTA
TGGTTTAGAATTAGCTTAAAATCAAGTAAAACACTTAGTTGAGTCATGAGAGAGTCAAAAGTTGGTTTTAGAGATATTATGCTTGTTTTTACATTGTTTT
GCACAGTTTTGATGAGAATTGAAGAAGGAAGTAAATCAAGGTGGACTTAGACTCGTGACAGATGAAGAAAAAGGATGAAAAGAAGAGTCAAAGGGACCGT
TGAGCGTCAGAATGGATTGCTGAGCGTCCAGGACGATTAGGGGCAAACCGCTCAGTGGTAAAGTTGACCGCTGAGCAGTCCAACAGCTAAAGGGGAAACC
GCTGAGCGGTTTACTTAGGCGCCTGAGCGGTTGTCTGTTTTTATTACCTCGGATTCTTTAATCCTTCTGTTATCTTTTTGGTCTATAAATAGACCCAGTG
CGATTCAAAACATAATCTTTTGGCAGAGAGAAACG