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Detailed information on CNT3088037


BLAST search results

BLAST vs Swiss-Prot:
sp|P25856|G3PA1_ARATH, E-value = 3e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676566Vigna radiataSetaria viridis9.7527.5282.44131forward
CNT30523786Vigna radiataSetaria italica9.7521.9882.44131forward
CNT30698911Vigna radiataQuercus lobata8.2641.2688.29111forward
CNT30372815Vigna radiataArabidopsis thaliana12.8761.7983.24173forward
CNT30268339Vigna radiataChenopodium quinoa13.7622.7382.7185forward
CNT30729008Vigna radiataCorchorus capsularis8.4821.3992.11114forward
CNT30379481Vigna radiataManihot esculenta9.658.986.05129forward
CNT30524759Vigna radiataPhaseolus vulgaris27.6830.4292.74372forward
CNT30628639Vigna radiataVigna unguiculata41.4478.3493.72557forward
CNT30196808Vigna radiataPisum sativum6.134.690.2482forward
CNT30490066Vigna radiataOlea europaea18.928.4879.92254forward
CNT30711851Vigna radiataGlycine max38.9145.3689.29523forward
CNT3093146Vigna radiataSolanum tuberosum11.6145.0985.26156forward
CNT30541340Vigna radiataBrassica napus10.7122.588.19144forward
CNT30509382Vigna radiataSolanum lycopersicum11.9825.282.61161forward
CNT30146657Vigna radiataMedicago truncatula22.9228.0886.04308forward
CNT30243463Vigna radiataAvena sativa8.3321.4183.93112forward
CNT30310642Vigna radiataCamelina sativa19.1239.3678.99257forward
CNT3059480Vigna radiataArabidopsis lyrata3.572089.5848forward
CNT30648504Vigna radiataRosa chinensis11.3821.0284.31153forward
CNT30215929Vigna radiataHelianthus annuus21.5830.7581.03290forward
CNT30622203Vigna radiataCajanus cajan14.8823.2393200forward
CNT30357074Vigna radiataLactuca sativa8.4121.1689.38113forward
CNT30572796Vigna radiataVitis vinifera8.8522.5488.24119forward
CNT30119544Vigna radiataCitrus clementina18.2321.382.86245forward
CNT30585204Vigna radiataEchinochloa crusgalli8.5622.7382.61115forward
CNT30726265Vigna radiataLupinus angustifolius14.8829.9986200forward
CNT3065586Vigna radiataSelaginella moellendorffii5.2829.5885.9271forward

Expression of CNT3088037

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MHVTLLQNHFLQNFTKLGACLDTIIFFCF*

>peptide 2 (33 aa)
MTEWKSSEAFLEKGRWFDEVRRPENSEKPFPFA*

>peptide 3 (51 aa)
MPFSFPFRVGSTRATAFAAPVEVGTMFRAAALARLRSRWLASRSLWSPVYE*

>peptide 4 (41 aa)
MAMTSRGDSLRPCQHLKKFLPILPNPFMATFSFASTIPFLQ*

Sequence

>CNT3088037
TGTGTTTCTCAGTAGGTGTTTAGAAGGAATGAAGCAACAAGTGTTGTAGTAGCATACAAAATTACAATGGCGTGCATGGTGCATAATAAAATATAGCAAC
GAGCTTTGATCATCACTTCCATTTGTTGGCAACAATGTCTGCCAAATCTACAACCCTTTGGGAGTAGCCCCACTCGTTGTCATACCAAGCAATCACCTTC
ACCAAGTCATCTCCCATCACCATGGTCAACGAGGAGTCAACGGCTCATCACACACCGAGAGGATTCCGTTCAGCTCCTTCTCTGCACTCTCTCTGAACGC
TGCATTCACTTCTTCTGCAAACGTCTTCTTTGACACCTGAACAACAAGATCCACTACCGAAACATTTGGGGTTGGCACACGCAGTGCAATGCCGTTCAGT
TTCCCTTTCAGGGTTGGCAGCACAAGGGCCACCGCCTTTGCTGCTCCGGTTGAAGTCGGGACAATGTTCAGAGCTGCGGCCCTAGCACGCCTTAGGTCAC
GGTGGCTCGCATCAAGAAGCCTCTGGTCTCCCGTGTATGAGTGAGTGGTTTTAGTGGTGCAAGAGGCATTGCTGATGATGGGTTCATCTGCGCTGTAATC
AAATTCATTGACACCGACCACATAGGTGGGGATGTCTCCTTTACCAGGTGCTGTGATGAGTACCTTCTTAGCTCCTGCTTGAATGTGTTTCCCAGCACCT
TCTCTGTCTACAAACACCCCAGTTCCTTCAATCACCAAGTCTATCCCCAACTCCCTGCAATAAAACCACACATTCACCTTCATGCATGTCACTCTCTTAC
AAAACCACTTTCTTCAAAATTTTACTAAACTAGGAGCATGTTTGGACACAATCATATTCTTTTGTTTTTAGCCAAGAGAAACTTTGAAAAGTACTTCTAG
TTTTGTATCCAAAGAGAGTTTAATTGCTTGGAAACTGAAGAAGAATCTTACTTCCAAGGAAGGTTAGCAGGGTTGCGATCAGAGACGACTTTGATTTCTT
TTCCATCAACGGAGATGATATCACTGCCAACAGGCTTGACATCAGCATCGAAGGTTCCAAGGATGGAATCATACTTGAGGAGGTGAGAGGCTTGTTTCAC
ACCACCAGTGTCGTTGATGGCAATGACATCAAGAGGGGACTCTTTACGACCGTGCCAGCATCTCAAGAAGTTCCTTCCAATTCTTCCAAACCCGTTTATG
GCAACCTTCAGTTTTGCTTCCACTATACCCTTCTTGCAATGACAGAATGGAAATCCTCAGAAGCTTTTCTGGAAAAGGGAAGGTGGTTTGATGAGGTGCG
AAGGCCAGAGAACTCAGAGAAGCCTTTCCCATTTGCCTGAATAG