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Detailed information on CNT3087979


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-152

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-161

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30274489Vigna radiataChenopodium quinoa70.3554.0885.5662forward
CNT30727227Vigna radiataCorchorus capsularis73.7560.484.58694forward
CNT30381284Vigna radiataManihot esculenta73.2272.8385.49689forward
CNT30628664Vigna radiataVigna unguiculata65.6751.9893.04618forward
CNT30169884Vigna radiataPistacia vera72.6969.383.92684forward
CNT3094992Vigna radiataSolanum tuberosum73.5459.4586.42692forward
CNT30171036Vigna radiataTrifolium pratense73.9644.4485.06696forward
CNT3021694Vigna radiataPopulus trichocarpa73.7571.6284.01694forward
CNT30723701Vigna radiataLupinus angustifolius72.939.0785.42686forward
CNT3050869Vigna radiataCucumis sativus66.2183.8584.75623forward

Expression of CNT3087979

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVIVFPVRVLTNICIPPRRRRTRCRVDSFWML*

>peptide 2 (45 aa)
MKLILMDYKRLLIAMKLKQIYLTGQQRPIQRKLLNLKTTAQKEEL*

>peptide 3 (38 aa)
MVSELSTSRVMVLPVKVLTKICICTEKHTLKDLNEPKR*

Sequence

>CNT3087979
GGCAAAGTATGAAAAAACGAAATAGCAGATACTAAATTTCAAAGCGAATGAAGTTGATATTAATGGATTACAAAAGGTTGTTGATAGCAATGAAGTTAAA
ACAAATTTATTTAACGGGTCAACAGAGACCCATACAGAGAAAGTTGTTAAATTTGAAGACAACAGCCCAGAAAGAGGAGTTATAGTACTTAAAAACCACC
ACGAAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTCCTCCCATCTTCCAACTGCTTCCCTGCGAAGATCAGTCTC
TGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGAATTTTTGCCTTCACATTGTCGATAGTGTCAGAACTCTCAACCTCCAGAGTGATGGTCTTCCCAGTCA
AGGTCTTAACAAAAATCTGCATCCCACCCCTGAGTCGGAGTACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTC
AAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCCTGAATCTTAGCCTTCACATTGTCAATGGTGTCTGAGCTCTCC
ACCTCAAGGGTGATTGTCTTTCCGGTAAGGGTCTTAACGAATATCTGCATTCCTCCACGTAGACGGAGGACCAGATGCAGGGTTGACTCCTTCTGGATGT
TGTAGTCAGCCAGGGTGCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGAATCCCTTCTTTGTCCTGAATTTTGGACTT
TACGTTGTCGATGGTGTCGGAACTCTCCACCTCAAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCATCTGCACCGAGAAACACACCTTG
AAAGATTTGAATGAACCGAAACGATAAAAATGAGATTGAAT