CANTATAdb - search

Detailed information on CNT3087966

BLAST search results

BLAST vs Swiss-Prot:
sp|P26302|KPPR_WHEAT, E-value = 1e-77

BLAST vs NONCODE:
NONMTRT001255, E-value = 1e-50

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691096	Vigna radiata	Oryza sativa	57.51	32.64	82.17	314	forward
CNT30670719	Vigna radiata	Setaria viridis	41.03	48.59	83.04	224	forward
CNT30513083	Vigna radiata	Juglans regia	52.38	65.15	86.36	286	forward
CNT30372685	Vigna radiata	Arabidopsis thaliana	29.49	39.95	82.61	161	forward
CNT30628885	Vigna radiata	Vigna unguiculata	70.15	91.63	96.34	383	forward
CNT30708150	Vigna radiata	Glycine max	83.15	83.76	88.33	454	forward
CNT30565281	Vigna radiata	Actinidia chinensis	46.52	54.27	83.86	254	forward
CNT30552726	Vigna radiata	Oryza glaberrima	57.51	63.18	82.48	314	forward
CNT30145996	Vigna radiata	Medicago truncatula	58.42	78	85.27	319	forward
CNT30608349	Vigna radiata	Gossypium raimondii	21.25	22.92	83.62	116	forward
CNT30686133	Vigna radiata	Triticum urartu	22.71	49.6	83.87	124	forward
CNT30364562	Vigna radiata	Sorghum bicolor	26.19	15.16	81.12	143	forward
CNT30595648	Vigna radiata	Oryza meridionalis	49.08	44.3	83.58	268	forward
CNT30369615	Vigna radiata	Oryza glumipatula	34.25	33.82	82.89	187	forward
CNT30644238	Vigna radiata	Cannabis sativa	39.56	81.2	82.41	216	forward
CNT30575421	Vigna radiata	Oryza barthii	57.51	43.73	82.48	314	forward
CNT30116076	Vigna radiata	Oryza nivara	60.99	46.38	82.28	333	forward
CNT30114771	Vigna radiata	Eutrema salsugineum	28.39	40.58	80	155	forward

Expression of CNT3087966

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MTVVVSLMRVLESGLPPFGGSAAPPNTLVSLLMKVLFPQPESAARPITTVCWSLAAHVIT*

>peptide 2 (54 aa)
VDAKVQETSDVVVDWFLNSNSIFDCFNLIIHEIKIVGSGVKGSDSLLLSASSIQ*

Sequence

>CNT3087966
GGTAGATGCTAAAGTCCAAGAGACCAGTGACGTGGTTGTAGATTGGTTTTTGAACAGCAATTCCATCTTTGATTGCTTTAACTTGATCATACATGAGATC
AAAATCGTTGGCTCTGGGGTCAAGGGCAGTGACTCCCTTCTCCTTTCTGCCAGTTCTATCCAATGAGTGGTAATCATCCAAGCATATGACTGTGGTGGTG
TCACTGATGAGAGTGTTGGAATCAGGGTTGCCACCCTTTGGTGGTTCTGCTGCTCCTCCAAACACACTGGTGAGCCTCCTCATGAAGGTACTTTTTCCAC
AACCTGAGTCAGCAGCCAGACCAATCACCACTGTCTGTTGGTCACTTGCTGCACATGTTATCACATAGCTTCTGCCACTGTTGATGCCCCTCTTGCTGTT
CCTCCTGCTTGTGGTGTAGAATACTACCTGCTTTTGGTGAAAACTCAGTTGTGTTTTTGATGGGGTTGAGATGGAGCAATTTGTGCTGAGAGATTGTGTT
GAGTACACAGTGCAAGCTGCCATTTTCTCTTTTTCCCCCTCTAGAG