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Detailed information on CNT3087915


BLAST search results

BLAST vs Swiss-Prot:
sp|P49440|CHSY_PHAVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30507146Vigna radiataNicotiana attenuata25.223.8779.92254forward

Expression of CNT3087915

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MVCAVQTSSNNGFSICGIGSEPTITAAAPSPNSACPTRLSKWVSLGPRKVTAVISEHTTSTRAPLLFSAKSLANRRTVPPAKHPCWYIMYLFT*

>peptide 2 (45 aa)
MVSPGPKPNRTPHSSPSPVVFSPFSADFLLISSKMKSTHALDMFP*

>peptide 3 (46 aa)
MINLINKKHMRRKLITVSHKLLIRQQGPKPCITCKLQPQAFLKIGA*

>peptide 4 (34 aa)
MMLYCDTMKNNGFDGKSWSKTKQDTPFKSFTCGF*

Sequence

>CNT3087915
TTTTGAAGGAACCAGATGATAAATTTAATAAATAAAAAGCATATGAGAAGAAAATTAATAACTGTGTCTCACAAGTTATTAATTAGGCAACAAGGGCCCA
AACCATGTATCACATGTAAATTACAACCTCAAGCATTTTTGAAAATTGGTGCATAATAATAATAAAACAACAGAGTTTGGATGATGCTATATTGCGACAC
TATGAAGAACAACGGTTTCGATGGTAAGTCCTGGTCCAAAACCAAACAGGACACCCCATTCAAGTCCTTCACCTGTGGTTTTTAGTCCATTTTCAGCTGA
TTTCCTCCTCATTTCATCCAAGATGAAAAGCACACATGCACTTGACATGTTCCCATAATCACTAAGCACATCTCTAGTAGCCTTCATCTTTTCTGGTTTC
AGACCCAACTTTTGTTCAACTTGGTCAAGAATTGCAGGCCCACCAGGGTGTGCAATCCAGAAGATGGAGTTGTAATCAGATATGTTCAATGGGTTGAAGG
CCTCAAAAAGTGCTTTCCCAATGTTTTTTGAGACAATCCCAGGAACATCCTTAAGGAGGTGAAAGGTGAGTCCAACTTCACGAAGGTGTCCATCAATCGC
ACCTTCACTGTCCGGAGCAATGGTCTGTGCAGTCCAAACAAGCTCAAACAACGGTTTCTCAATCTGTGGAATTGGGTCAGAACCGACGATCACCGCAGCC
GCTCCATCTCCAAACAGTGCCTGTCCGACAAGACTGTCTAAGTGGGTGTCACTTGGGCCACGGAAGGTGACTGCAGTGATCTCAGAACACACGACAAGCA
CACGAGCACCCTTGTTGTTCTCGGCCAAATCCTTAGCCAATCGAAGAACCGTGCCTCCCGCAAAGCACCCCTGTTGGTACATCATGTACCTCTTCACATA
AGGGCGAAGTCCGAGGAGTTTGGTGAGCTGGTAATCAGCACCAGGCATGTCCACGCCACTGGTGGTGCAAAAGATCAAATGTGTAATCTTTGACTTTGGC
TGCCCCCA