« Back to Vigna radiata search


Detailed information on CNT3087878


BLAST search results

BLAST vs Swiss-Prot:
sp|P49440|CHSY_PHAVU, E-value = 0.0

BLAST vs NONCODE:
NONPOPT000627, E-value = 1e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Vigna radiataQuercus lobata16.2560.3378.74254forward
CNT30524897Vigna radiataPhaseolus vulgaris39.0399.3593.93610forward
CNT30628733Vigna radiataVigna unguiculata82.0995.7592.831283forward
CNT30195402Vigna radiataPisum sativum61.7466.1482.59965forward
CNT3045136Vigna radiataPrunus dulcis28.7372.1980.18449forward
CNT30156272Vigna radiataPistacia vera54.1354.8678.72846forward
CNT3096581Vigna radiataSolanum tuberosum27.9623.3979.18437forward
CNT30564019Vigna radiataActinidia chinensis19.7141.5780.52308forward
CNT30171603Vigna radiataTrifolium pratense27.1980.6586.35425forward
CNT30143557Vigna radiataMedicago truncatula61.6191.9883.49963forward
CNT3074040Vigna radiataBrassica juncea16.1257.0183.33252forward
CNT30610059Vigna radiataGossypium raimondii22.7151.9881.13355forward
CNT30646903Vigna radiataRosa chinensis19.5123.0781.97305forward
CNT30128249Vigna radiataCorymbia citriodora11.3225.8880.79177forward
CNT30151821Vigna radiataPrunus persica26.1771.0180.68409forward
CNT30705527Vigna radiataPrunus avium16.756.3782.76261forward
CNT30644974Vigna radiataCannabis sativa22.7844.3378.09356forward
CNT3022855Vigna radiataPopulus trichocarpa20.2845.7479.18317forward
CNT30114123Vigna radiataFicus carica26.6225.8981.01416forward

Expression of CNT3087878

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MSTPLVVQKIKCVIFDFGCPHSFMAFTAASFPSFGTSTTTMSCLASKEGAI*

>peptide 2 (46 aa)
MINLINKKHMRRKLITVSHKLLIRQQGPKPCITCKLQPQAFLKIGA*

>peptide 3 (93 aa)
MVCAVQTSSNNGFSICGIGSEPTITAAAPSPXSACPTRLSKWVSLXPRKVTAVISEHTTSTRAPLLFSAKSLANRRTVPPAKHPCWYIMYLFT*

>peptide 4 (45 aa)
MVSPGPKPNRTPHSSPSPVVFSPFSADFLLISSKMKSTHALDMFP*

>peptide 5 (39 aa)
MVSQSVELGQNRQSLQLLHLQXVPVRQDCLSGCHLXHGR*

>peptide 6 (34 aa)
MMLYCDTMKNNGFDGKSWSKTKQDTPFKSFTCGF*

Sequence

>CNT3087878
TTTTGAAGGAACCAGATGATAAATTTAATAAATAAAAAGCATATGAGAAGAAAATTAATAACTGTGTCTCACAAGTTATTAATTAGGCAACAAGGGCCCA
AACCATGTATCACATGTAAATTACAACCTCAAGCATTTTTGAAAATTGGTGCATAATAATAATAAAACAACAGAGTTTGGATGATGCTATATTGCGACAC
TATGAAGAACAACGGTTTCGATGGTAAGTCCTGGTCCAAAACCAAACAGGACACCCCATTCAAGTCCTTCACCTGTGGTTTTTAGTCCATTTTCAGCTGA
TTTCCTCCTCATTTCATCCAAGATGAAAAGCACACATGCACTTGACATGTTCCCATAATCACTAAGCACATCTCTAGTAGCCTTCATCTTTTCTGGTTTC
AGACCCAACTTTTGTTCAACTTGGTCAAGAATTGCAGGCCCACCAGGGTGTGCAATCCAGAAGATGGAGTTGTAATCAGATATGTTCAATGGGTTGAAGG
CCTCAAAAAGTGCTTTCCCAATGTTTTTTGAGACAATCCCAGGAACATCCTTAAGGAGGTGAAAGGTGAGTCCAACTTCACGAAGGTGNCCATCAATNGC
ACCTTCACTGTCTGGAGCAATGGTCTGTGCAGTCCAAACCAGCTCAAACAATGGTTTCTCAATCTGTGGAATTGGGTCAGAACCGACAATCACTGCAGCT
GCTCCATCTCCAAANAGTGCCTGTCCGACAAGACTGTCTAAGTGGGTGTCACTTGGNCCACGGAAGGTGACTGCAGTGATCTCAGAACACACGACAAGCA
CACGAGCACCCTTGTTGTTCTCGGCCAAATCCTTAGCCAATCGAAGAACCGTGCCTCCTGCAAAACACCCCTGTTGGTACATCATGTACCTCTTCACATA
AGGGCGAAGTCCGAGGAGTTTGGTGAGCTGGTAATCAGCACCAGGCATGTCGACACCACTGGTGGTGCAAAAGATCAAGTGTGTAATCTTTGACTTTGGC
TGCCCCCACTCCTTTATGGCCTTCACTGCAGCCTCTTTCCCGAGCTTTGGTACCTCTACCACCACTATGTCCTGCCTCGCATCCAAAGAAGGTGCCATAT
AAGCACACATGTTAGGATTCTCCTTNAAGACCTCCTCCGTCACGTGCATGTATCTCTTCTTGATCATAGACTTGTCGCCTGGAACATCGTAAACNAATTA
TTAGCTTGATTCAGCAACAGACATCATGAAACATCATGTGAAAGTGAAAAGACTATAAATATATTGATTCAATAACTTACACATGCGCTGGAACTTCTCC
TTGAGATCGGTCATGTGCTCGCTGTTTGTGATTCTGAAGTAATAGTCGGGATAGGTGCTCTGATCAACACAGTTTGGTGGAGTTGCAGTTCCAATGGCAA
GGATTGTTGCTGGGCCTTCTGCCCTTTGAGCTTGGCGGATCTCCGACACACTCACCATCTTTACTTTGTTGGTAATGAAGTTTCCGGTGATGTTGATGAA
GGAATTTGGTTGATGGACGGATAGAACTGAGTTTACAGAAAGAGGGTCTTTCTGGTTGTTGCT