« Back to Vigna radiata search


Detailed information on CNT3087863


BLAST search results

BLAST vs Swiss-Prot:
sp|P49440|CHSY_PHAVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30485883Vigna radiataOlea europaea6.922.4186.1565forward
CNT30597791Vigna radiataFraxinus excelsior7.2222.7485.2968forward

Expression of CNT3087863

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MVCAVQTSSNNGFSICGIGSEPTITAAAPSPNSACPTRLSKWVSLGPRKVTAVISEHTTSTRAPLLFSAKSLANRRTVPPAKHPCWYIMYLFT*

>peptide 2 (45 aa)
MVSPGPKPNRTPHSSPSPVVFSPFSADFLLISSKMKSTHALDMFP*

>peptide 3 (34 aa)
MMLYCDTMKNNGFDGKSWSKTKQDTPFKSFTCGF*

>peptide 4 (29 aa)
SHKLLIRQQGPKPCITCKLQPQAFLKIGA*

Sequence

>CNT3087863
TCTCACAAGTTATTAATTAGGCAACAAGGGCCCAAACCATGTATCACATGTAAATTACAACCTCAAGCATTTTTGAAAATTGGTGCATAATAATAATAAA
ACAACAGAGTTTGGATGATGCTATATTGCGACACTATGAAGAACAACGGTTTCGATGGTAAGTCCTGGTCCAAAACCAAACAGGACACCCCATTCAAGTC
CTTCACCTGTGGTTTTTAGTCCATTTTCAGCTGATTTCCTCCTCATTTCATCCAAGATGAAAAGCACACATGCACTTGACATGTTCCCATAATCACTAAG
CACATCTCTAGTAGCCTTCATCTTTTCTGGTTTCAGACCCAACTTTTGTTCAACTTGGTCAAGAATTGCAGGCCCACCAGGGTGTGCAATCCAGAAGATG
GAGTTGTAATCAGATATGTTCAATGGGTTGAAGGCCTCAAAAAGTGCTTTCCCAATGTTTTTTGAGACAATCCCAGGAACATCCTTAAGGAGGTGAAAGG
TGAGTCCCACTTCACGAAGGTGTCCATCAATCGCACCTTCACTGTCCGGAGCAATGGTCTGTGCAGTCCAAACAAGCTCAAACAACGGTTTCTCAATCTG
TGGAATTGGGTCAGAACCGACGATCACCGCAGCCGCTCCATCTCCAAACAGTGCCTGTCCGACAAGACTGTCTAAGTGGGTGTCACTTGGGCCACGGAAG
GTGACTGCAGTGATCTCAGAACACACGACAAGCACACGAGCACCCTTGTTGTTCTCGGCCAAATCCTTAGCCAATCGAAGAACCGTGCCTCCCGCAAAGC
ACCCCTGTTGGTACATCATGTACCTCTTCACATAAGGGCGAAGTCCGAGGAGTTTGGTGAGCTGGTAATCAGCACCAGGCATGTCCACGCCACTGGTGGT
GCAAAAGATCAAATGTGTAATCTTTGACTTTGGCTGCCCCCA