CANTATAdb - search

Detailed information on CNT3087836

BLAST search results

BLAST vs Swiss-Prot:
sp|P51076|CHSY_FRAAN, E-value = 4e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30379505	Vigna radiata	Manihot esculenta	32.1	28.7	80.61	165	forward

Expression of CNT3087836

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MENNSLDSKSWSKTKQDTPFKSFACCFESIFS*

Sequence

>CNT3087836
TATCCGAACTTACACAATTAATTTTACAATTACTAAAAGTGCAAATTAAATTTCTTTAAACTTTTATAATTATATAATAGAATCACAAATACAATTATTC
TTTAAAATCTAACGAAAAATTAAAAAAAAAAAATACAAGTAATAAAGAAATGAGATAGGGTGATTTTAGATCTCCACACTATGGAGAACAACAGTCTCGA
TAGTAAGTCCTGGTCCAAAACCAAACAGGACACCCCATTCAAGTCCTTCGCCTGTTGTTTTGAGTCCATTTTCAGCTGATTTCCTCCTCATCTCCCCATT
CAAGTCCTTCACCTGTTGTTTTTAGTCCATTTTCAGCTGATTTCCTCCTCATCTCATCCAATATGAATAGCACACATGCACTTGACATGTTCCCATAGTC
ACTCAGCACATCTCTAGTGGCCTTCATCTTTTCTGGTTTCAGACCCAACTTTTGTTCAACTTGGTCAAGAATTGCAGGCCCACCAGGGTGTGCAATCCAG
AAGATGGAGTTGTA