Detailed information on CNT3087688


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96499|RL44_GOSHI, E-value = 4e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694718Vigna radiataOryza sativa68.5235.5883.11148forward
CNT30678034Vigna radiataSetaria viridis41.6723.4488.8990forward
CNT30401984Vigna radiataBeta vulgaris68.5272.281.76148forward
CNT30298301Vigna radiataTriticum aestivum38.4319.9585.5483reverse complement
CNT30668197Vigna radiataTriticum dicoccoides35.6535.4890.9177forward
CNT30311937Vigna radiataCamelina sativa65.7459.9280.28142forward
CNT30452338Vigna radiataSaccharum spontaneum75.4645.2883.44163forward
CNT30102486Vigna radiataOryza rufipogon68.5256.4983.11148forward
CNT30175989Vigna radiataVigna angularis10062.2598.15216forward

Expression of CNT3087688

Peptides detected in this lncRNA

>peptide 1 (64 aa)
RLSLSTITGLFAIVTAFPLSSDAILTLLVLGNLVQSVLPALLTLAVSLLRFWNVTIVTARATGI*

Sequence

>CNT3087688
CAGGCTTAGTTTGTCCACCATAACCGGATTGTTTGCGATCGTAACGGCGTTTCCCCTGAGCAGCGATGCTATCCTTACCCTTCTTGTATTGGGTAACCTT
GTGCAGAGTGTGCTTCCTGCACTCCTTACTCTTGCAGTAAGTCTTCTTCGTTTTTGGAACGTTACCATCGTGACGGCGCGTGCGACCGGAATCTGAAGAA
GTAGGGTTCTGATGTG