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Detailed information on CNT3086369


BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 2e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3027583Vigna radiataPopulus trichocarpa15.5820.584.6998forward

Expression of CNT3086369

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MGMLRLMPSMLALMAVQRQTATSRSRSPSSTEQHGWSIKDVSAHTQLKCIPGTALCSRSRVRVRIREWVRLCASEAATCHGKEKQIDGKKES*

>peptide 2 (31 aa)
MGGPLRTLAHTPSLSASLGQLFAAGVGLELG*

>peptide 3 (28 aa)
MAKKSKLMVKKRARVEDLEDSILQYNCNK

Sequence

>CNT3086369
CGATATGAATTTTCCAATTTAGCCTTACACAAGACAGAATAATTCATCAAATTTAGAAAATTAGAAGCCATTCCAGACAACAGTCGAAGTCAAATTACAG
TCACAACTAACGGGTACAATTGCATTCTCAGTAAATGAGTTAGCAAAGTGGGAACAACACAACAATCACAAAATCACAAATAAACAAACAGACAAACACG
GTGCATGAACTGAGAATGACGTGCTTAACTGCATGCGTCTAGCTGCACTGGAAGTCAGAGGGTGGCGACTTCTCACAGGCGTTAAGGATCAAGCTTAGTG
AAATGGGGATGTTAAGGTTAATGCCAAGTATGTTAGCTTTGATGGCAGTGCAGAGGCAAACCGCAACTTCAAGATCAAGAAGCCCTTCTAGCACCGAGCA
ACATGGGTGGTCCATTAAGGACGTTAGCGCACACACCCAGCTTAAGTGCATCCCTGGGACAGCTCTTTGCAGCAGGAGTAGGGTTAGAGTTAGGATAAGG
GAATGGGTTAGGCTTTGTGCAAGTGAAGCAGCCACTTGCCATGGCAAAGAAAAGCAAATTGATGGTAAAAAAGAGAGCTAGAGTTGAAGATCTAGAAGAC
TCCATCTTGCAATACAACTGTAATAAGTC