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Detailed information on CNT3086297


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-49

BLAST vs NONCODE:
NONGMAT000508, E-value = 9e-78

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Vigna radiataOryza sativa17.244.3579.5200forward
CNT30673219Vigna radiataSetaria viridis14.3637.787.43167forward
CNT30523218Vigna radiataSetaria italica13.5928.9487.34158forward
CNT30318271Vigna radiataCorylus avellana23.928.0280.22278forward
CNT30703567Vigna radiataQuercus lobata25.4558.6184.46296forward
CNT30375418Vigna radiataArabidopsis thaliana11.7858.0584.67137forward
CNT3042757Vigna radiataPrunus dulcis25.7149.3482.94299forward
CNT30186872Vigna radiataSecale cereale24.9458.1283.79290forward
CNT30284518Vigna radiataTriticum aestivum27.0950.5683.49315forward
CNT30221015Vigna radiataHordeum vulgare13.5929.9888.61158forward
CNT30382783Vigna radiataTriticum turgidum26.9155.9983.39313forward
CNT30563984Vigna radiataActinidia chinensis14.3680.2980.24167forward
CNT30553196Vigna radiataOryza glaberrima19.3540.3280225forward
CNT30441099Vigna radiataAegilops tauschii24.9456.283.45290forward
CNT30255921Vigna radiataAvena sativa24.9451.684.14290forward
CNT30656490Vigna radiataTriticum dicoccoides27.0950.9783.49315forward
CNT3059678Vigna radiataArabidopsis lyrata15.1336.5983.52176forward
CNT30261175Vigna radiataBrassica rapa19.7848.7379.57230forward
CNT30471244Vigna radiataSaccharum spontaneum26.5732.2983.5309forward
CNT30135649Vigna radiataLolium perenne24.9456.5384.83290forward
CNT3015042Vigna radiataZea mays17.233.7881200forward
CNT30211318Vigna radiataHelianthus annuus25.7176.8680.94299forward
CNT30679384Vigna radiataTriticum urartu24.9447.8583.79290forward
CNT30348363Vigna radiataEragrostis tef24.9452.0682.41290forward
CNT30620798Vigna radiataCajanus cajan14.9633.3389.08174forward
CNT30595992Vigna radiataOryza meridionalis6.3634.2687.8474forward
CNT30357929Vigna radiataLactuca sativa22.758.9383.33264forward
CNT30644824Vigna radiataCannabis sativa22.8727.5985.71266forward
CNT30325970Vigna radiataAsparagus officinalis25.9743.7778.15302forward
CNT30147953Vigna radiataBrachypodium distachyon26.7435.7982.64311forward
CNT30101647Vigna radiataOryza rufipogon23.9929.9482.8279forward
CNT30496126Vigna radiataDigitaria exilis24.4241.7682.04284forward
CNT30117618Vigna radiataOryza nivara19.355079.11225forward

Expression of CNT3086297

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MFKLKTKKYKPFQKTIHLLICLLYSNFKLKTCVSSKKLN*

>peptide 2 (37 aa)
MITQPETLQILDVGFKKSQKPGRAISLILIFNLALVR*

>peptide 3 (34 aa)
MLIILKFQTENLCILKETELNLKINISIIQRYFV*

>peptide 4 (33 aa)
MAVTVLRRACSVYVTASRITFSRKILRTPRVSS*

>peptide 5 (48 aa)
MLSLRTLRCRLAPPFPSPLPPFPLPDMADDFSFFSDSKLNMRANNLAT*

>peptide 6 (51 aa)
MSNSFSLNLIILSATSQSQARPILETVSNIDNEIEITRNLISEALYKSPIL*

Sequence

>CNT3086297
CTATTAGTTTATCAAATATATAAGTGGAAAAAATATGTCTAACCAAAACTTCAAATTAATGATTCTCAACTTCATGACTATAAAATAATGTTTTTTACTT
ATTTATATTTAAAATTATGTTTAAACTAAAAACAAAAAAGTATAAACCCTTCCAAAAAACTATTCACCTACTTATATGCTTATTATACTCAAATTTCAAA
CTGAAAACTTGTGTATCCTCAAAGAAACTGAATTGAACTTGAAGATTAACATATCAATTATCCAGAGATACTTTGTCTAAGAGCAATAAACTTTTATACA
ATATTACCATCCTGGAAGAAAAATTTTTCAACGTCAAACATCAAAACTAAAGCGCTTTTACAATCAAGTTTAATTTAATCTCAACAAAAATCAAACATAA
CAGAATTCTTCCACAGCCAAGTTATGTCATCCATGCCTTAACTACAATGGCAAACAAAGACTTGATTCAATGATAACACAGCCAGAAACACTTCAGATTC
TAGACGTTGGATTCAAGAAAAGTCAAAAACCAGGAAGGGCTATATCTTTAATTTTAATTTTTAATTTAGCTCTGGTTAGGTAACAAGAAAACAGAAATAC
ACAACGAAATTTCCTTCAAAATGTCCAATTCATTCTCACTGAATTTAATAATTCTCTCAGCTACATCTCAAAGCCAAGCAAGACCAATTCTTGAAACAGT
AAGCAATATCGACAATGAAATTGAAATTACAAGAAACCTAATTTCCGAGGCATTGTACAAATCCCCAATTCTCTAACCACCGAAACCGTAGAGGGTCCTG
CCCTGCCTCTTGAGAGCGTAGACAACATCCATGGCGGTGACGGTCTTGCGGCGAGCGTGCTCGGTGTACGTGACAGCGTCGCGGATAACGTTCTCGAGAA
AGATCTTGAGAACACCACGAGTTTCTTCGTAGATGAGACCACTGATACGTTTAACGCCACCACGTCTAGCGAGACGGCGGATCGCGGGCTTGGTGATTCC
CTGAATGTTATCCCTCAGAACCTTACGGTGTCGCTTGGCACCTCCCTTTCCGAGCCCCTTGCCTCCCTTTCCTCTTCCAGACATGGCTGACGATTTTTCC
TTTTTCTCTGATTCAAAACTGAATATGCGAGCAAACAACTTGGCGACTTAGTGAGATGATCCA