« Back to Vigna radiata search


Detailed information on CNT3085988


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU33|ERLL3_ARATH, E-value = 4e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30629401Vigna radiataVigna unguiculata44.0129.8194.16257forward
CNT30709039Vigna radiataGlycine max48.4645.2188.69283forward
CNT30174473Vigna radiataVigna angularis40.9293.7397.91239forward

Expression of CNT3085988

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MGRLRSKESEMGRLRLIPKMFARRAVQRHTAASRSTRPLRRLQQGVTGG*

Sequence

>CNT3085988
TGTAAAAGCATTTTCATTTCTCAGTTAAAAAATAATAACGGACATATTTGATTGTTTTGCTTTACATAAGAAAGCATTAATTTATTTAAAACAAAACACT
GCAGATGGAGTTAATACCATCCATGCACGTACAAGAATCACACCTGGATGAATAAGAAAGCACGAAAGAAATGAAAGGAAGGAATAAAAAACACGATAAT
TGTGTATAGGCCATGATCAGGCACATTGGAAATCACGGGGAACCTGCCTTGAGCAAACGTTGAGAAGGAGGGAGAGTGAGATGGGAAGGTTGAGAAGCAA
GGAGAGTGAGATGGGAAGGTTGAGATTGATACCCAAAATGTTTGCTCGAAGGGCAGTGCAGAGACATACTGCAGCCTCAAGATCAACCAGACCATTGAGG
AGGCTACAGCAAGGGGTAACTGGTGGTTGACCCAAGGTGACGTTCACCAACCCGTTTAGCACATTGGCACACACTCCTAGTTTAAGTGCATCACGGGGGC
ATGTGGTCCCAGAACCTCCAGAACCACCAGAGCCACCTGAACCACCAGATCCACCGGAACCACCGGAGCCACCTGAACCACCCG