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Detailed information on CNT3085938


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30282360Vigna radiataChenopodium quinoa6.6231.2298.4464forward
CNT30205883Vigna radiataHelianthus annuus7.453298.6172reverse complement

Expression of CNT3085938

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVKLSKTLKSVSVAAGIRAQVSTATTWNSHH*

>peptide 2 (55 aa)
LERAGEREKRFLKRFLVARKRGEFWVDKAEKNQRREEVLGLQAEIIGVRHRRYRK*

Sequence

>CNT3085938
TTTTGGAGAGAGCAGGAGAGAGGGAAAAACGGTTTTTGAAGAGGTTTTTGGTGGCACGAAAGAGAGGAGAATTTTGGGTGGATAAGGCAGAGAAAAATCA
GAGAAGGGAAGAGGTTCTGGGACTGCAAGCAGAGATCATCGGAGTTAGGCATAGAAGATATAGGAAGTGAGGAATATAAGAGTAATTCTCAGTGACTTTT
TAGACCTCCAAATCACCAAAGTTGATAGCTCCATTAGCGTTCCCTTCGGTGAAACCAGTTTGGTTACTGAGACCTTTAATCTTCTGATCGCCGGTGTTCT
TGAATTTTCCAACAGAACGCCCCTTACTTCCTGTTCTTGCTGCCGCAGAAGCACCGTCGTTGTTGGGTGGCGTTGCGTTCTGACCACTTTCACCCTCATC
CATGCTATTTAGCACATCAACAAGACCCTTCAGAGCTTCAATTTTTTGACGAAGGTCTGCCATATCAAAGATTTTCTCTTTCAGATGTTGTTGATTTATT
TGTCAGAATGCATCACAGAGGGTTCCTTTTTATATATACATGATCAAGGGAAGGAACGGTTGTTCTGAAACTTAACACAGAAGCATTCACTTTGTTAGTG
AATAATCTTTCGAATAAAGTTATACTTGGTTCCGTTTGATGGAATGTTGTTTTAATCAAAAGAAGTTCCAACACTGAAGCATCTTCTTACTGTTTTCTTG
ATATAACAGATGCGGTTTGAATTTGTTGGCCTTTCTTATTTATTGGGAAAGCATATATTCAAATAACGCATTTTGGACAAAAAAAAAAACATAGTGTAAA
AAACTGCGAAGGATGGTGAAGTTGTCTAAAACGTTAAAAAGTGTGAGTGTGGCTGCTGGGATTCGAGCCCAGGTCTCCACGGCCACAACGTGGAATTCTC
ACCACTAAACTACAGCCACTCTTGTTGAAAGATTCCTATGCAAACAATTATATTTACGTAATTTGTT