Detailed information on CNT3085860


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30270405Vigna radiataChenopodium quinoa8.5122.385.8699forward
CNT30526301Vigna radiataPhaseolus vulgaris9.8821.7491.3115forward
CNT30712149Vigna radiataGlycine max12.8923.4491.33150forward
CNT30559435Vigna radiataActinidia chinensis8.0825.4787.2394forward

Expression of CNT3085860

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MLEAMCAYSLSVTPSPSLSFNPLFSSLSVNIYVSDFCFHFPFICYKLPYPLGLCCHIIQ*

>peptide 2 (35 aa)
MGISFHFSGMYCCFPHMDYSFISMQIEVHQFPQEK*

>peptide 3 (33 aa)
MFFSLPLTLIQPIPEVLCSNDTHQISVNECRLG*

>peptide 4 (52 aa)
MECRRLKSSRKKNDGKLKQPCLFPIYLGLIKKKKKRKSYGKRVCLNDKCLHV*

>peptide 5 (39 aa)
MFASDDSLDIRFYLKPILIFVYFTPEFTRLTARVLGMLG*

Sequence

>CNT3085860
TTCAAGTTCGTCATTTGTTCCATGAGAAAGTGAACTTGTGTTGAATGTTTGATAAAAAAAAGGGTGTTGATTGTTAGAGAAACAATTGAATGTTTTTTTC
TCTCCCCTTAACCCTCATCCAACCCATTCCAGAAGTATTATGCAGCAATGATACACATCAGATTTCAGTAAATGAATGCAGATTAGGGTAAGGGAGGTGA
CAGAAGAGAGTGAGCACACATGGTACTTTCTTGGATGATAAGGTTTCATGCTTGAAGCTATGTGTGCTTACTCTCTATCTGTCACCCCATCTCCATCTCT
TTCTTTCAATCCTTTATTTTCTTCACTTTCTGTTAATATATATGTATCTGATTTTTGTTTTCACTTTCCCTTCATATGCTATAAGTTACCCTATCCCTTA
GGCTTGTGTTGTCATATCATTCAGTAGTATGCTTTATGGGCATCTCATTCCATTTCTCAGGTATGTATTGCTGCTTTCCACATATGGATTATTCTTTTAT
TAGCATGCAGATTGAAGTGCATCAGTTTCCTCAAGAAAAGTAATTCTATTTCTGCTTTGTCTGAAGTATATGTGTTCGCTTATAGAGAGCCTATTTTCAC
AGGTACAAGTATCTGAAGCTCTAATTAGTTGATGAATTTTGATCTTGTGTTCTCTCAGTTAGCCTACGTTTAAGAGGTTTATGTTGACTAATCACTGAAA
ACAGCTTTATGTTTGCATCTGATGACAGTTTAGACATAAGATTCTACTTAAAACCCATCCTAATTTTCGTTTATTTTACTCCTGAGTTTACCAGATTAAC
TGCTAGGGTTTTGGGGATGCTCGGTTAAGAAGAAAAATTGATCAGCAAAGGTTCTAAAGGTCTTGTTGATGAAATGGAATGCAGACGGTTGAAATCCTCC
AGAAAAAAAAATGATGGGAAATTAAAACAACCATGTTTATTTCCTATATATTTAGGGTTGATAAAAAAAAAGAAAAAAAGAAAGAGCTATGGGAAAAGGG
TATGTCTAAATGATAAGTGTCTGCATGTTTGATTTTTACCTAAAATCTGCACAATCATTTAATTGTAATTAATACTCTGATCAAATATACAAGCATCAGT
GCATGCTAAAATTGTACAAACTATGCTAATTGCGTATAGGGTTTGCTTTTATATATGTGTATTA