Detailed information on CNT3085819


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 8e-117

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316325Vigna radiataCorylus avellana23.3416.4379.74306forward
CNT30547200Vigna radiataIpomoea triloba11.5234.1680.13151forward
CNT3071936Vigna radiataQuercus suber6.7936.9385.3989forward
CNT30711018Vigna radiataGlycine max30.0578.9685.79394forward
CNT3098801Vigna radiataSolanum tuberosum7.727.8284.16101forward
CNT30171034Vigna radiataTrifolium pratense17.3234.8779.74227forward
CNT30143980Vigna radiataMedicago truncatula26.4788.7581.84347forward
CNT30713341Vigna radiataMalus domestica golden5.1923.8685.2968forward
CNT30109318Vigna radiataOryza longistaminata4.522.7889.8359forward

Expression of CNT3085819

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVPATYLTMKYVTHCPNLTNRGSNSMTPSLSEK*

>peptide 2 (40 aa)
YKNKSHNVNITEEKCSSQISWMQINNLDYHILSFETILSG*

>peptide 3 (41 aa)
MEGRSFGFNCIHQSETMIIFFTILFSFSVTSSISISFPLSS*

>peptide 4 (51 aa)
MSSSPFVYQKNNKQHGASNISNYEVCNTLSQFNKSWFKLHDAFIVREINSNR

>peptide 5 (54 aa)
MYPIVPLAAVILTTLLSVEYSFANPKSDIFGVNFSSSRMLWGLMSKCKICISHP*

>peptide 6 (57 aa)
MLVDERIFFHHLPMFHEETEKVLEVILGLQSLLQAFPLLYSWKGDHLVSIVYTKVKL*

Sequence

>CNT3085819
AGTATAAAAATAAGTCACACAATGTAAACATTACAGAGGAAAAATGTTCAAGTCAAATAAGTTGGATGCAAATAAATAATTTAGACTATCACATACTTTC
ATTTGAGACAATCTTAAGTGGATAACTTGACGAACCAACAAAGTCAGACAATGTTGGTTGATGAGAGGATATTCTTTCATCATCTTCCAATGTTTCATGA
GGAAACAGAGAAGGTTTTGGAGGTAATTTTAGGTTTGCAAAGTCTCCTTCAAGCATTTCCACTACTTTATTCATGGAAGGGCGATCATTTGGTTTCAATT
GTATACACCAAAGTGAAACTATGATCATCTTTTTTACAATTTTGTTCTCATTCTCGGTGACATCTTCCATTTCTATATCTTTCCCTTTATCAAGTTGATC
ATAAATCCAAAAGGGAAAGTAAAGTTGGCTTGAATGCTCTGCATGGGGGTTTAGGTTTTTCCTCTTGCTTGCTATTTCCATCAAAAACATTCCAAAACTA
TAAACATCAGACTTATGTGATATTCTTCCGACATTTTTATAAAACAACTCTGGAGCCATGTACCCAATTGTTCCTCTTGCTGCTGTCATACTCACAACAC
TTTTATCTGTTGAATATAGTTTTGCCAATCCAAAATCAGATATCTTTGGAGTGAATTTTTCATCAAGCAGGATGTTGTGGGGTTTGATGTCAAAATGCAA
AATCTGCATCTCACACCCATGATGTAGATACGAAATTCCACGTGCTACTCCAATTGCTATATCATGTATTGTGTCATAGGTTAAATGTACATTCCCTTTT
GTAGAAAATATAAATTTGTCAAGAGATCCATTGAGCATGAAGTCATAGACAAGTGCACGTTTTGAGCCCTCAGCACAATATCCAATTAAATGCACTACAT
TTTGGTGATGTATTCTTCCAATTGTTGCAACTTCACTGATAAAATCTTCTCCTTTACCTTTTGAATTTCGTAATACTTTTATGGCAACAGAAGGTCCACT
TCGCAACTTCCCCTTGAATACAGAGCCATAACCTCCTTCACCCAACTTTTCATTGAAACCTTTGGCCATCTTCTTAATCTCCTTGTATGAGTATCGAATA
GGCATCAAGCTATTTTGCTCTAAATAATTTTCAATATTTTCGTATACTGACGAATGTCTTCTTCTCCATTTGTATACCAAAAAAACAATAAACAACATGG
TGCCAGCAACATATCTAACTATGAAGTATGTAACACACTGTCCCAATTTAACAAATCGTGGTTCAAACTCCATGACGCCTTCATTGTCAGAGAAATAAAT
TCCAACAGATT