Detailed information on CNT3085458


BLAST search results

BLAST vs Swiss-Prot:
sp|A4GGA7|RPOC2_PHAVU, E-value = 2e-59

BLAST vs NONCODE:
NONVVIT002936, E-value = 2e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3045209Vigna radiataPrunus dulcis33.941.3890.83120reverse complement
CNT30234601Vigna radiataBrassica oleracea39.8329.9490.07141forward
CNT30155137Vigna radiataPrunus persica44.3522.7990.45157forward

Expression of CNT3085458

Peptides detected in this lncRNA

>peptide 1 (46 aa)
GVIFLLHVHFHNDAVFPKSNFGVQHLGLAILXKVLLKGHQFLMKWM*

Sequence

>CNT3085458
GGCGTAATTTTTCTACTGCATGTACATTTCCATAATGATGCTGTTTTTCCAAAATCAAATTTTGGTGTTCAGCATCTCGGACTAGCCATCCTTTNGAAGG
TATTGTTAAAAGGTCATCAATTCCTAATGAAATGGATGTAGCCGTAGCTTGGCGGAATCCCAGAGTCTTGACTTGATCCAGGATATGTGATGTATATGCC
ATTCCGAAGTGATCTATTAATCTGCTAATAAGTCGTTTAATGGCAGTTCCACCTATCACTTTATTGTGAAACATTAGATTGGTCCGTTCTGNCATAAGTA
CCTCCCTATTCCACTCAGTGGGATTCATTCAGTTCAACAATGGATTTGAGTCAA